hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-03033731/chunk_1/iprscan-20080812-03033731.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hg03448 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00032 532.9 1.3e-155 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00032 1/11 44 104 .. 1 79 [] 27.0 0.0026 SM00032 2/11 108 161 .. 1 79 [] 47.2 2.2e-09 SM00032 3/11 167 224 .. 1 79 [] 53.2 3.4e-11 SM00032 4/11 228 283 .. 1 79 [] 41.6 1e-07 SM00032 5/11 288 342 .. 1 79 [] 48.4 9.4e-10 SM00032 6/11 349 403 .. 1 79 [] 60.2 2.6e-13 SM00032 7/11 410 463 .. 1 79 [] 60.4 2.3e-13 SM00032 8/11 472 522 .. 1 79 [] 15.5 1.1 SM00032 9/11 530 583 .. 1 79 [] 46.4 3.7e-09 SM00032 10/11 589 645 .. 1 79 [] 68.0 1.2e-15 SM00032 11/11 650 703 .. 1 79 [] 64.9 9.9e-15 Alignments of top-scoring domains: SM00032: domain 1 of 11, from 44 to 104: score 27.0, E = 0.0026 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C+ P+ i++G + + ++ p + +G +y C++ ++ hg03448 44 CDyPD----IKHGGLYHENMRR---PYFPVAVGKYYSYYCDEHFETP 83 GgsqpekSrestsstitCtsn.WspppsgplPtC<-* gs + +i+Ct ++Wsp + P C hg03448 84 SGSY--------WDHIHCTQDgWSPAV----P-C 104 SM00032: domain 2 of 11, from 108 to 161: score 47.2, E = 2.2e-09 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C P +enG+ + + +++ G ++ + C+pGY l hg03448 108 CYfPY----LENGYNQNYG--------RKFVQGKSIDVACHPGYALP 142 GgsqpekSrestsstitCtsn.WspppsgplPtC<-* +t+tC++n+Wsp+ P+C hg03448 143 KA----------QTTVTCMENgWSPT-----PRC 161 SM00032: domain 3 of 11, from 167 to 224: score 53.2, E = 3.4e-11 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++ idienG+++ s+ ty ++++y+C+ GY+ hg03448 167 CSkSS--IDIENGFISESQ--------YTYALKEKAKYQCKLGYVTA 203 GgsqpekSrestsstitCtsn.WspppsgplPtC<-* g++ s +itC ++Ws + PtC hg03448 204 DGET--------SGSITCGKDgWSAQ-----PTC 224 SM00032: domain 4 of 11, from 228 to 283: score 41.6, E = 1e-07 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C+ P + +n+r + + ++ ++t+ y+C++GY+ + hg03448 228 CDiP----VFMNARTKNDF--------TWFKLNDTLDYECHDGYESN 262 GgsqpekSrestsstitCtsn.WspppsgplPtC<-* gs+ +i+C n+Ws+ P+C hg03448 263 TGST--------TGSIVCGYNgWSDL-----PIC 283 SM00032: domain 5 of 11, from 288 to 342: score 48.4, E = 9.4e-10 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C P i+ v ++ k+ y++G+++++sC+pG+t+v hg03448 288 CElPK----IDVHLVPDRK-------KDQYKVGEVLKFSCKPGFTIV 323 GgsqpekSrestsstitCtsn.WspppsgplPtC<-* G +++++C + sp P+C hg03448 324 G-----------PNSVQCYHFgLSPDL----PIC 342 SM00032: domain 6 of 11, from 349 to 403: score 60.2, E = 2.6e-13 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++Pp ++ nG v+ + k++y + ++v+y Cnp + ++ hg03448 349 CGpPP---ELLNGNVKEKT-------KEEYGHSEVVEYYCNPRFLMK 385 GgsqpekSrestsstitCtsn.WspppsgplPtC<-* G ++ i+C +++W+ P C hg03448 386 G-----------PNKIQCVDGeWTTL-----PVC 403 SM00032: domain 7 of 11, from 410 to 463: score 60.4, E = 2.3e-13 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++ p ++e+G + ss ++y+yG++v++ C + +t++ hg03448 410 CGdIP---ELEHGWAQLSS--------PPYYYGDSVEFNCSESFTMI 445 GgsqpekSrestsstitCtsn.WspppsgplPtC<-* G ++itC+ + W+ P+C hg03448 446 G-----------HRSITCIHGvWTQL-----PQC 463 SM00032: domain 8 of 11, from 472 to 522: score 15.5, E = 1.1 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C + + + + + + k ++ ++s ++y+C+ + hg03448 472 CKsSN----LIILEEHLKN-------KKEFDHNSNIRYRCR----GK 503 GgsqpekSrestsstitCtsn.WspppsgplPtC<-* g + + +C++++W+p++ C hg03448 504 EG----------WIHTVCINGrWDPEV-----NC 522 SM00032: domain 9 of 11, from 530 to 583: score 46.4, E = 3.7e-09 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv Cp+Pp +i+n + +++ +y+ G++v++ C+++Y ++ hg03448 530 CPpPP---QIPNSHNMTTT--------LNYRDGEKVSVLCQENYLIQ 565 GgsqpekSrestsstitCtsn.WspppsgplPtC<-* ++itC +++W + P C hg03448 566 E-----------GEEITCKDGrWQSI-----PLC 583 SM00032: domain 10 of 11, from 589 to 645: score 68.0, E = 1.2e-15 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C++Pp +ie+G+++ss+ss +++y +G++++y+C+ G++++ hg03448 589 CSqPP---QIEHGTINSSRSS-----QESYAHGTKLSYTCEGGFRIS 627 GgsqpekSrestsstitCtsn.WspppsgplPtC<-* +++ tC ++Ws+p P+C hg03448 628 E-----------ENETTCYMGkWSSP-----PQC 645 SM00032: domain 11 of 11, from 650 to 703: score 64.9, E = 9.9e-15 *->Cp.PppdidienGrvtsssssitstpkgtysyGstvtysCnpGYtlv C +Pp +i +G v s ++y yG++vty+C +G+ + hg03448 650 CKsPP---EISHGVVAHMS--------DSYQYGEEVTYKCFEGFGID 685 GgsqpekSrestsstitCtsn.WspppsgplPtC<-* G +++++C+ +Ws+p P+C hg03448 686 G-----------PAIAKCLGEkWSHP-----PSC 703 //