# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohg03450.fasta.nr -Q hg03450.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hg03450, 432 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6840576 sequences Expectation_n fit: rho(ln(x))= 5.7307+/-0.000187; mu= 8.1002+/- 0.010 mean_var=84.0087+/-16.173, 0's: 42 Z-trim: 61 B-trim: 271 in 2/65 Lambda= 0.139930 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087606|dbj|BAD92250.1| sorting nexin 1 isofor ( 432) 2777 570.3 2.7e-160 gi|114657550|ref|XP_001174054.1| PREDICTED: sortin ( 424) 2716 558.0 1.3e-156 gi|55725081|emb|CAH89408.1| hypothetical protein [ ( 522) 2590 532.6 7.2e-149 gi|114657542|ref|XP_001174058.1| PREDICTED: sortin ( 522) 2589 532.4 8.3e-149 gi|17380569|sp|Q13596|SNX1_HUMAN Sorting nexin-1 ( 522) 2589 532.4 8.3e-149 gi|30584281|gb|AAP36389.1| Homo sapiens sorting ne ( 523) 2589 532.4 8.3e-149 gi|119598070|gb|EAW77664.1| sorting nexin 1, isofo ( 528) 2589 532.4 8.4e-149 gi|1293680|gb|AAA98672.1| sorting nexin 1 ( 522) 2588 532.2 9.6e-149 gi|74000462|ref|XP_535509.2| PREDICTED: similar to ( 521) 2584 531.4 1.7e-148 gi|62897145|dbj|BAD96513.1| sorting nexin 1 isofor ( 522) 2580 530.6 2.9e-148 gi|3152940|gb|AAC17182.1| sorting nexin 1 [Homo sa ( 522) 2580 530.6 2.9e-148 gi|75055292|sp|Q5RFP8.1|SNX1_PONAB Sorting nexin-1 ( 522) 2578 530.2 3.9e-148 gi|62896681|dbj|BAD96281.1| sorting nexin 1 isofor ( 522) 2574 529.4 6.8e-148 gi|109081472|ref|XP_001106400.1| PREDICTED: sortin ( 522) 2571 528.8 1e-147 gi|75075873|sp|Q4R503|SNX1_MACFA Sorting nexin-1 ( 522) 2568 528.2 1.6e-147 gi|194035033|ref|XP_001928534.1| PREDICTED: simila ( 429) 2559 526.3 4.7e-147 gi|67969703|dbj|BAE01200.1| unnamed protein produc ( 474) 2559 526.3 5.1e-147 gi|18149005|dbj|BAB83537.1| sorting nexin 1 [Macac ( 474) 2559 526.3 5.1e-147 gi|122131725|sp|Q05B62|SNX1_BOVIN Sorting nexin-1 ( 522) 2547 523.9 3e-146 gi|86437988|gb|AAI12586.1| SNX1 protein [Bos tauru ( 474) 2546 523.7 3.2e-146 gi|148529822|gb|ABQ82143.1| nexin 1 [Equus caballu ( 511) 2546 523.7 3.4e-146 gi|74180394|dbj|BAE32360.1| unnamed protein produc ( 522) 2544 523.3 4.5e-146 gi|17367373|sp|Q99N27|SNX1_RAT Sorting nexin-1 ( 522) 2535 521.5 1.6e-145 gi|13124572|sp|Q9WV80|SNX1_MOUSE Sorting nexin-1 ( 522) 2533 521.1 2.1e-145 gi|194206575|ref|XP_001918067.1| PREDICTED: sortin ( 490) 2529 520.3 3.5e-145 gi|148694168|gb|EDL26115.1| sorting nexin 1 [Mus m ( 468) 2526 519.7 5.1e-145 gi|74204473|dbj|BAE39983.1| unnamed protein produc ( 522) 2526 519.7 5.6e-145 gi|41946961|gb|AAH66044.1| Sorting nexin 1 [Mus mu ( 521) 2520 518.5 1.3e-144 gi|12248793|dbj|BAB20283.1| sorting nexin 1 [Mus m ( 521) 2514 517.3 3e-144 gi|114657544|ref|XP_510470.2| PREDICTED: hypotheti ( 557) 2484 511.2 2.1e-142 gi|34535423|dbj|BAC87312.1| unnamed protein produc ( 557) 2473 509.0 9.8e-142 gi|126277030|ref|XP_001366476.1| PREDICTED: simila ( 527) 2438 501.9 1.3e-139 gi|126277033|ref|XP_001366535.1| PREDICTED: simila ( 528) 2425 499.3 7.8e-139 gi|118095485|ref|XP_425052.2| PREDICTED: hypotheti ( 514) 2409 496.1 7.1e-138 gi|119598071|gb|EAW77665.1| sorting nexin 1, isofo ( 457) 2350 484.1 2.5e-134 gi|74000468|ref|XP_865581.1| PREDICTED: similar to ( 456) 2348 483.7 3.3e-134 gi|74208017|dbj|BAE29122.1| unnamed protein produc ( 492) 2340 482.1 1.1e-133 gi|3152942|gb|AAC17183.1| sorting nexin 1A [Homo s ( 457) 2339 481.9 1.2e-133 gi|126277039|ref|XP_001366636.1| PREDICTED: simila ( 460) 2265 467.0 3.7e-129 gi|47124721|gb|AAH70650.1| MGC82200 protein [Xenop ( 509) 2257 465.4 1.2e-128 gi|152012598|gb|AAI50243.1| Snx1 protein [Danio re ( 558) 2151 444.0 3.6e-122 gi|125854440|ref|XP_709791.2| PREDICTED: sorting n ( 659) 2151 444.0 4.2e-122 gi|190338601|gb|AAI63869.1| Snx1 protein [Danio re ( 662) 2151 444.0 4.2e-122 gi|66911056|gb|AAH97137.1| Zgc:114075 [Danio rerio ( 524) 1976 408.7 1.5e-111 gi|55729024|emb|CAH91249.1| hypothetical protein [ ( 305) 1911 395.4 8.6e-108 gi|60098595|emb|CAH65128.1| hypothetical protein [ ( 518) 1881 389.5 8.8e-106 gi|126333776|ref|XP_001363712.1| PREDICTED: simila ( 519) 1877 388.7 1.5e-105 gi|109078354|ref|XP_001092244.1| PREDICTED: simila ( 519) 1875 388.3 2e-105 gi|74152064|dbj|BAE32065.1| unnamed protein produc ( 519) 1875 388.3 2e-105 gi|194374439|dbj|BAG57115.1| unnamed protein produ ( 402) 1869 387.0 3.8e-105 >>gi|62087606|dbj|BAD92250.1| sorting nexin 1 isoform a (432 aa) initn: 2777 init1: 2777 opt: 2777 Z-score: 3033.0 bits: 570.3 E(): 2.7e-160 Smith-Waterman score: 2777; 100.000% identity (100.000% similar) in 432 aa overlap (1-432:1-432) 10 20 30 40 50 60 hg0345 LHPFFPSTMAPKKMGSMKNKTKSHRISLQEATNSSKPQPTYEELEEEEQEDQFDLTVGIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LHPFFPSTMAPKKMGSMKNKTKSHRISLQEATNSSKPQPTYEELEEEEQEDQFDLTVGIT 10 20 30 40 50 60 70 80 90 100 110 120 hg0345 DPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPP 70 80 90 100 110 120 130 140 150 160 170 180 hg0345 PPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEEL 130 140 150 160 170 180 190 200 210 220 230 240 hg0345 PRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVV 190 200 210 220 230 240 250 260 270 280 290 300 hg0345 ETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFF 250 260 270 280 290 300 310 320 330 340 350 360 hg0345 LLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAK 310 320 330 340 350 360 370 380 390 400 410 420 hg0345 DEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 DEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKY 370 380 390 400 410 420 430 hg0345 WEAFLPEAKAIS :::::::::::: gi|620 WEAFLPEAKAIS 430 >>gi|114657550|ref|XP_001174054.1| PREDICTED: sorting ne (424 aa) initn: 2716 init1: 2716 opt: 2716 Z-score: 2966.6 bits: 558.0 E(): 1.3e-156 Smith-Waterman score: 2716; 100.000% identity (100.000% similar) in 424 aa overlap (9-432:1-424) 10 20 30 40 50 60 hg0345 LHPFFPSTMAPKKMGSMKNKTKSHRISLQEATNSSKPQPTYEELEEEEQEDQFDLTVGIT :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MAPKKMGSMKNKTKSHRISLQEATNSSKPQPTYEELEEEEQEDQFDLTVGIT 10 20 30 40 50 70 80 90 100 110 120 hg0345 DPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPP 60 70 80 90 100 110 130 140 150 160 170 180 hg0345 PPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKEEL 120 130 140 150 160 170 190 200 210 220 230 240 hg0345 PRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 PRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHAVV 180 190 200 210 220 230 250 260 270 280 290 300 hg0345 ETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 ETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFF 240 250 260 270 280 290 310 320 330 340 350 360 hg0345 LLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 LLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQAK 300 310 320 330 340 350 370 380 390 400 410 420 hg0345 DEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKY 360 370 380 390 400 410 430 hg0345 WEAFLPEAKAIS :::::::::::: gi|114 WEAFLPEAKAIS 420 >>gi|55725081|emb|CAH89408.1| hypothetical protein [Pong (522 aa) initn: 2588 init1: 2588 opt: 2590 Z-score: 2827.8 bits: 532.6 E(): 7.2e-149 Smith-Waterman score: 2590; 94.483% identity (96.552% similar) in 435 aa overlap (4-432:88-522) 10 20 hg0345 LHPFFPSTMAPKKMGSMKNKTKSHR----ISL- .: .. . .. : .:. :. ::: gi|557 SPKRATSLLPINNGSKENGIHEEQDQEPQDLFADATVELSLDSTQNNQKKMPAKTLISLP 60 70 80 90 100 110 30 40 50 60 70 80 hg0345 -QEATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 PQEATNSSKPQPTYEELEEEEQEDQFDLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFR 120 130 140 150 160 170 90 100 110 120 130 140 hg0345 SKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 SKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEK 180 190 200 210 220 230 150 160 170 180 190 200 hg0345 RRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 RRAALERYLQRIVNHPTMLQDPDVREFLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSK 240 250 260 270 280 290 210 220 230 240 250 260 hg0345 MTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 MTIKMNESDIWFEEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTAQFAKSLAMLGSS 300 310 320 330 340 350 270 280 290 300 310 320 hg0345 EDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 EDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTW 360 370 380 390 400 410 330 340 350 360 370 380 hg0345 QRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|557 QRWQDAQATLQKKREAEARLLWANKPDKLQQAKDEILEWESRVTQYERDFERISTVVRKE 420 430 440 450 460 470 390 400 410 420 430 hg0345 VIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS ::::::::::::::::::::::::::::::::::::::::::::: gi|557 VIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPEAKAIS 480 490 500 510 520 >>gi|114657542|ref|XP_001174058.1| PREDICTED: sorting ne (522 aa) initn: 2588 init1: 2588 opt: 2589 Z-score: 2826.7 bits: 532.4 E(): 8.3e-149 Smith-Waterman score: 2589; 99.511% identity (99.511% similar) in 409 aa overlap (26-432:114-522) 10 20 30 40 50 hg0345 LHPFFPSTMAPKKMGSMKNKTKSHRISL--QEATNSSKPQPTYEELEEEEQEDQF ::: ::::::::::::::::::::::::: gi|114 EPQDLFADATVELSLDSTQNNQKKVPAKTLISLPPQEATNSSKPQPTYEELEEEEQEDQF 90 100 110 120 130 140 60 70 80 90 100 110 hg0345 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQ 150 160 170 180 190 200 120 130 140 150 160 170 hg0345 NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVRE 210 220 230 240 250 260 180 190 200 210 220 230 hg0345 FLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 FLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRL 270 280 290 300 310 320 240 250 260 270 280 290 hg0345 RKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 RKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQE 330 340 350 360 370 380 300 310 320 330 340 350 hg0345 QANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKP 390 400 410 420 430 440 360 370 380 390 400 410 hg0345 DKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYS 450 460 470 480 490 500 420 430 hg0345 QQQLAKYWEAFLPEAKAIS ::::::::::::::::::: gi|114 QQQLAKYWEAFLPEAKAIS 510 520 >>gi|17380569|sp|Q13596|SNX1_HUMAN Sorting nexin-1 g (522 aa) initn: 2588 init1: 2588 opt: 2589 Z-score: 2826.7 bits: 532.4 E(): 8.3e-149 Smith-Waterman score: 2589; 99.511% identity (99.511% similar) in 409 aa overlap (26-432:114-522) 10 20 30 40 50 hg0345 LHPFFPSTMAPKKMGSMKNKTKSHRISL--QEATNSSKPQPTYEELEEEEQEDQF ::: ::::::::::::::::::::::::: gi|173 EPQDLFADATVELSLDSTQNNQKKVLAKTLISLPPQEATNSSKPQPTYEELEEEEQEDQF 90 100 110 120 130 140 60 70 80 90 100 110 hg0345 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQ 150 160 170 180 190 200 120 130 140 150 160 170 hg0345 NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVRE 210 220 230 240 250 260 180 190 200 210 220 230 hg0345 FLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 FLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRL 270 280 290 300 310 320 240 250 260 270 280 290 hg0345 RKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 RKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQE 330 340 350 360 370 380 300 310 320 330 340 350 hg0345 QANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 QANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKP 390 400 410 420 430 440 360 370 380 390 400 410 hg0345 DKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|173 DKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYS 450 460 470 480 490 500 420 430 hg0345 QQQLAKYWEAFLPEAKAIS ::::::::::::::::::: gi|173 QQQLAKYWEAFLPEAKAIS 510 520 >>gi|30584281|gb|AAP36389.1| Homo sapiens sorting nexin (523 aa) initn: 2588 init1: 2588 opt: 2589 Z-score: 2826.7 bits: 532.4 E(): 8.3e-149 Smith-Waterman score: 2589; 99.511% identity (99.511% similar) in 409 aa overlap (26-432:114-522) 10 20 30 40 50 hg0345 LHPFFPSTMAPKKMGSMKNKTKSHRISL--QEATNSSKPQPTYEELEEEEQEDQF ::: ::::::::::::::::::::::::: gi|305 EPQDLFADATVELSLDSTQNNQKKVLAKTLISLPPQEATNSSKPQPTYEELEEEEQEDQF 90 100 110 120 130 140 60 70 80 90 100 110 hg0345 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQ 150 160 170 180 190 200 120 130 140 150 160 170 hg0345 NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVRE 210 220 230 240 250 260 180 190 200 210 220 230 hg0345 FLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 FLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRL 270 280 290 300 310 320 240 250 260 270 280 290 hg0345 RKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 RKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQE 330 340 350 360 370 380 300 310 320 330 340 350 hg0345 QANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 QANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKP 390 400 410 420 430 440 360 370 380 390 400 410 hg0345 DKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 DKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYS 450 460 470 480 490 500 420 430 hg0345 QQQLAKYWEAFLPEAKAIS ::::::::::::::::::: gi|305 QQQLAKYWEAFLPEAKAISL 510 520 >>gi|119598070|gb|EAW77664.1| sorting nexin 1, isoform C (528 aa) initn: 2588 init1: 2588 opt: 2589 Z-score: 2826.6 bits: 532.4 E(): 8.4e-149 Smith-Waterman score: 2589; 99.511% identity (99.511% similar) in 409 aa overlap (26-432:120-528) 10 20 30 40 50 hg0345 LHPFFPSTMAPKKMGSMKNKTKSHRISL--QEATNSSKPQPTYEELEEEEQEDQF ::: ::::::::::::::::::::::::: gi|119 AGKFGLKNATVELSLDSTQNNQKKVLAKTLISLPPQEATNSSKPQPTYEELEEEEQEDQF 90 100 110 120 130 140 60 70 80 90 100 110 hg0345 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQ 150 160 170 180 190 200 120 130 140 150 160 170 hg0345 NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVRE 210 220 230 240 250 260 180 190 200 210 220 230 hg0345 FLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 FLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRL 270 280 290 300 310 320 240 250 260 270 280 290 hg0345 RKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 RKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQE 330 340 350 360 370 380 300 310 320 330 340 350 hg0345 QANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKP 390 400 410 420 430 440 360 370 380 390 400 410 hg0345 DKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 DKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYS 450 460 470 480 490 500 420 430 hg0345 QQQLAKYWEAFLPEAKAIS ::::::::::::::::::: gi|119 QQQLAKYWEAFLPEAKAIS 510 520 >>gi|1293680|gb|AAA98672.1| sorting nexin 1 (522 aa) initn: 2588 init1: 2588 opt: 2588 Z-score: 2825.6 bits: 532.2 E(): 9.6e-149 Smith-Waterman score: 2588; 100.000% identity (100.000% similar) in 404 aa overlap (29-432:119-522) 10 20 30 40 50 hg0345 LHPFFPSTMAPKKMGSMKNKTKSHRISLQEATNSSKPQPTYEELEEEEQEDQFDLTVG :::::::::::::::::::::::::::::: gi|129 FADATVELSLDSTQNNQKKVLAKTLIXLPPQEATNSSKPQPTYEELEEEEQEDQFDLTVG 90 100 110 120 130 140 60 70 80 90 100 110 hg0345 ITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|129 ITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIV 150 160 170 180 190 200 120 130 140 150 160 170 hg0345 PPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|129 PPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 210 220 230 240 250 260 180 190 200 210 220 230 hg0345 ELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|129 ELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRLRKLHA 270 280 290 300 310 320 240 250 260 270 280 290 hg0345 VVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANND :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|129 VVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANND 330 340 350 360 370 380 300 310 320 330 340 350 hg0345 FFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|129 FFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKPDKLQQ 390 400 410 420 430 440 360 370 380 390 400 410 hg0345 AKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|129 AKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYSQQQLA 450 460 470 480 490 500 420 430 hg0345 KYWEAFLPEAKAIS :::::::::::::: gi|129 KYWEAFLPEAKAIS 510 520 >>gi|74000462|ref|XP_535509.2| PREDICTED: similar to Sor (521 aa) initn: 2583 init1: 2583 opt: 2584 Z-score: 2821.3 bits: 531.4 E(): 1.7e-148 Smith-Waterman score: 2584; 99.022% identity (99.511% similar) in 409 aa overlap (26-432:113-521) 10 20 30 40 50 hg0345 LHPFFPSTMAPKKMGSMKNKTKSHRISL--QEATNSSKPQPTYEELEEEEQEDQF ::: :::::::::::.::::::::::::: gi|740 EPQDLFADATVELSLDSSQNNQKKVPAKTLISLPPQEATNSSKPQPSYEELEEEEQEDQF 90 100 110 120 130 140 60 70 80 90 100 110 hg0345 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQ :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|740 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPMFRSKQFAVKRRFSDFLGLYEKLSEKHSQ 150 160 170 180 190 200 120 130 140 150 160 170 hg0345 NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVRE 210 220 230 240 250 260 180 190 200 210 220 230 hg0345 FLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 FLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRL 270 280 290 300 310 320 240 250 260 270 280 290 hg0345 RKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 RKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQE 330 340 350 360 370 380 300 310 320 330 340 350 hg0345 QANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 QANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKP 390 400 410 420 430 440 360 370 380 390 400 410 hg0345 DKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|740 DKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYS 450 460 470 480 490 500 420 430 hg0345 QQQLAKYWEAFLPEAKAIS ::::::::::::::::::: gi|740 QQQLAKYWEAFLPEAKAIS 510 520 >>gi|62897145|dbj|BAD96513.1| sorting nexin 1 isoform a (522 aa) initn: 2579 init1: 2579 opt: 2580 Z-score: 2816.9 bits: 530.6 E(): 2.9e-148 Smith-Waterman score: 2580; 99.267% identity (99.267% similar) in 409 aa overlap (26-432:114-522) 10 20 30 40 50 hg0345 LHPFFPSTMAPKKMGSMKNKTKSHRISL--QEATNSSKPQPTYEELEEEEQEDQF ::: ::::::::::::::::::::::::: gi|628 EPQDLFADATVELSLDSTQNNQKKVLAKTLISLPPQEATNSSKPQPTYEELEEEEQEDQF 90 100 110 120 130 140 60 70 80 90 100 110 hg0345 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 DLTVGITDPEKIGDGMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQ 150 160 170 180 190 200 120 130 140 150 160 170 hg0345 NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVRE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 NGFIVPPPPEKSLIGMTKVKVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVRE 210 220 230 240 250 260 180 190 200 210 220 230 hg0345 FLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 FLEKEELPRAVGTQTLSGAGLLKMFNKATDAVSKMTIKMNESDIWFEEKLQEVECEEQRL 270 280 290 300 310 320 240 250 260 270 280 290 hg0345 RKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQE ::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::: gi|628 RKLHAVVETLVNHRKELALNTAQFAKSLAMLGSSEGNTALSRALSQLAEVEEKIEQLHQE 330 340 350 360 370 380 300 310 320 330 340 350 hg0345 QANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 QANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQKKREAEARLLWANKP 390 400 410 420 430 440 360 370 380 390 400 410 hg0345 DKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|628 DKLQQAKDEILEWESRVTQYERDFERISTVVRKEVIRFEKEKSKDFKNHVIKYLETLLYS 450 460 470 480 490 500 420 430 hg0345 QQQLAKYWEAFLPEAKAIS ::::::::::::::::::: gi|628 QQQLAKYWEAFLPEAKAIS 510 520 432 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 03:07:32 2008 done: Tue Aug 12 03:09:56 2008 Total Scan time: 847.650 Total Display time: 0.130 Function used was FASTA [version 34.26.5 April 26, 2007]