hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-03095733/chunk_1/iprscan-20080812-03095733.nocrc
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Query sequence: hg03450
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF09325.1.ls Vps5 C terminal like                           417.3   1.9e-122   1
PF09325.1.fs Vps5 C terminal like                           415.3   7.9e-122   1
PF00787.14.fs PX domain                                      148.3      1e-44   1
PF00787.14.ls PX domain                                      150.2    5.2e-42   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00787.14.fs   1/1      51   178 ..     1   131 []   148.3    1e-44
PF00787.14.ls   1/1      51   178 ..     1   131 []   150.2  5.2e-42
PF09325.1.fs   1/1     194   427 ..     1   238 []   415.3 7.9e-122
PF09325.1.ls   1/1     194   427 ..     1   238 []   417.3 1.9e-122

Alignments of top-scoring domains:
PF00787.14.fs: domain 1 of 1, from 51 to 178: score 148.3, E = 1e-44
                   *->dpili.vvvvdpetsrkkegdkkhtyyvyevttktn......kewsV
                      d+++ +v ++dpe++    gd++++y++y+vtt+t+ +  ++k + V
     hg03450    51    DQFDLtVGITDPEKI----GDGMNAYVAYKVTTQTSlplfrsKQFAV 93   

                   kRRYsdFeeLhekLlrkfp..grilPplPpKklfgryrkeslpmtsvwh.
                   kRR+sdF+ L+ekL +k+ ++g i+Pp+P+K+l+g        mt+v+++
     hg03450    94 KRRFSDFLGLYEKLSEKHSqnGFIVPPPPEKSLIG--------MTKVKVg 135  

                   ssnnfdeefiekRrkgLeeyLqrllqhPelsnesevvleFLesd<-*
                   ++++ + ef+ekRr++Le+yLqr+++hP + + +++v+eFLe +   
     hg03450   136 KEDSSSAEFLEKRRAALERYLQRIVNHPTMLQ-DPDVREFLEKE    178  

PF00787.14.ls: domain 1 of 1, from 51 to 178: score 150.2, E = 5.2e-42
                   *->dpili.vvvvdpetsrkkegdkkhtyyvyevttktn......kewsV
                      d+++ +v ++dpe++    gd++++y++y+vtt+t+ +  ++k + V
     hg03450    51    DQFDLtVGITDPEKI----GDGMNAYVAYKVTTQTSlplfrsKQFAV 93   

                   kRRYsdFeeLhekLlrkfp..grilPplPpKklfgryrkeslpmtsvwh.
                   kRR+sdF+ L+ekL +k+ ++g i+Pp+P+K+l+g        mt+v+++
     hg03450    94 KRRFSDFLGLYEKLSEKHSqnGFIVPPPPEKSLIG--------MTKVKVg 135  

                   ssnnfdeefiekRrkgLeeyLqrllqhPelsnesevvleFLesd<-*
                   ++++ + ef+ekRr++Le+yLqr+++hP + + +++v+eFLe +   
     hg03450   136 KEDSSSAEFLEKRRAALERYLQRIVNHPTMLQ-DPDVREFLEKE    178  

PF09325.1.fs: domain 1 of 1, from 194 to 427: score 415.3, E = 7.9e-122
                   *->lkglfskffssvsksssyKfnEpDpWFedkrqyiDsLEsqLKkLyka
                      l+++f+k++++vsk+ ++K+nE+D WFe+k+q++++ E+ L+kL+ +
     hg03450   194    LLKMFNKATDAVSKM-TIKMNESDIWFEEKLQEVECEEQRLRKLHAV 239  

                   lellvnqRkeLasatgefakslasLasvElsRtsLSraLsqLaeveerik
                   +e+lvn+RkeLa++t++faksla+L+s+E++ t+LSraLsqLaevee+i+
     hg03450   240 VETLVNHRKELALNTAQFAKSLAMLGSSEDN-TALSRALSQLAEVEEKIE 288  

                   ellerqAlqDvltLgetidEYlRligSVKavFnqRvkawqqwqnaeqdLs
                   +l+++qA++D++ L+e++++Y+Rl++ V+a+F+qR+k wq+wq+a+++L+
     hg03450   289 QLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQ 338  

                   KKraqlaKlkgagksqqdKlqqakkEvdeaerKvqqakkeFedisetiKk
                   KKr+++a+l++a  +++dKlqqak+E+ e+e++v+q++++Fe+is++++k
     hg03450   339 KKREAEARLLWA--NKPDKLQQAKDEILEWESRVTQYERDFERISTVVRK 386  

                   ElerFeteRvdDFKnvveiyLEsaiesQkEvielWEtflpe<-*
                   E+ rFe+e+++DFKn+v++yLE ++ sQ++++++WE+flpe   
     hg03450   387 EVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPE    427  

PF09325.1.ls: domain 1 of 1, from 194 to 427: score 417.3, E = 1.9e-122
                   *->lkglfskffssvsksssyKfnEpDpWFedkrqyiDsLEsqLKkLyka
                      l+++f+k++++vsk+ ++K+nE+D WFe+k+q++++ E+ L+kL+ +
     hg03450   194    LLKMFNKATDAVSKM-TIKMNESDIWFEEKLQEVECEEQRLRKLHAV 239  

                   lellvnqRkeLasatgefakslasLasvElsRtsLSraLsqLaeveerik
                   +e+lvn+RkeLa++t++faksla+L+s+E++ t+LSraLsqLaevee+i+
     hg03450   240 VETLVNHRKELALNTAQFAKSLAMLGSSEDN-TALSRALSQLAEVEEKIE 288  

                   ellerqAlqDvltLgetidEYlRligSVKavFnqRvkawqqwqnaeqdLs
                   +l+++qA++D++ L+e++++Y+Rl++ V+a+F+qR+k wq+wq+a+++L+
     hg03450   289 QLHQEQANNDFFLLAELLSDYIRLLAIVRAAFDQRMKTWQRWQDAQATLQ 338  

                   KKraqlaKlkgagksqqdKlqqakkEvdeaerKvqqakkeFedisetiKk
                   KKr+++a+l++a  +++dKlqqak+E+ e+e++v+q++++Fe+is++++k
     hg03450   339 KKREAEARLLWA--NKPDKLQQAKDEILEWESRVTQYERDFERISTVVRK 386  

                   ElerFeteRvdDFKnvveiyLEsaiesQkEvielWEtflpe<-*
                   E+ rFe+e+++DFKn+v++yLE ++ sQ++++++WE+flpe   
     hg03450   387 EVIRFEKEKSKDFKNHVIKYLETLLYSQQQLAKYWEAFLPE    427  

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