hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-03214623/chunk_1/iprscan-20080812-03214623.nocrc
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Query sequence: hg03819
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                        70.7    4.5e-18   5
PF00400.22.fs WD domain, G-beta repeat                        62.5    1.2e-16   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   3/6     316   348 ..     7    38 .]    12.5    0.015
PF00400.22.fs   4/6     403   447 ..     1    38 []    24.1  8.2e-06
PF00400.22.ls   3/5     403   447 ..     1    38 []    26.1  0.00012
PF00400.22.fs   5/6     451   490 ..     1    38 []    10.8    0.046

Alignments of top-scoring domains:
PF00400.22.fs: domain 3 of 6, from 316 to 348: score 12.5, E = 0.015
                   *->gHtstVtcvafspd.sgpllasgSrDgtikiWd<-*
                      +Ht++V+cv ++   + + l+s S Dg+i+ W+   
     hg03819   316    AHTHPVYCVNVVGTqNAHNLISISTDGKICSWS    348  

PF00400.22.fs: domain 4 of 6, from 403 to 447: score 24.1, E = 8.2e-06
                   *->geck.vl.gHtstVtcvafspd.....sgpllasgSrDgtikiWd<-
                            ++gH++++t + ++   ++ + ++l++++S D t+k+W   
     hg03819   403    AGISeMFeGHQGPITGIHCHAAvgavdFSHLFVTSSFDWTVKLWT   447  

                   *
                    
     hg03819     -   -    

PF00400.22.ls: domain 3 of 5, from 403 to 447: score 26.1, E = 0.00012
                   *->geck.vl.gHtstVtcvafspd.....sgpllasgSrDgtikiWd<-
                            ++gH++++t + ++   ++ + ++l++++S D t+k+W   
     hg03819   403    AGISeMFeGHQGPITGIHCHAAvgavdFSHLFVTSSFDWTVKLWT   447  

                   *
                    
     hg03819     -   -    

PF00400.22.fs: domain 5 of 6, from 451 to 490: score 10.8, E = 0.046
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       +++ ++++  + V++v +sp ++ l+a+    g + +W+   
     hg03819   451    NKPLySFeDNADYVYDVMWSPTHPALFACVDGMGRLDLWN    490  

//