hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-03214623/chunk_1/iprscan-20080812-03214623.nocrc
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Query sequence: hg03819
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  93.4    2.7e-23   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/5     259   298 ..     1    46 []    17.1     0.98
SM00320    2/5     305   348 ..     1    46 []    16.4      1.3
SM00320    3/5     402   447 ..     1    46 []    24.7    0.013
SM00320    4/5     450   490 ..     1    46 []    19.5     0.41
SM00320    5/5     495   535 ..     1    46 []    15.8      1.5

Alignments of top-scoring domains:
SM00320: domain 1 of 5, from 259 to 298: score 17.1, E = 0.98
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++++ ++++  ++  +V s +f   +     pnl++ g   g+i lW
     hg03819   259    KtTPEYVFH-CQS--AVMSATFAKFH-----PNLVVGGTySGQIVLW 297  

                   d<-*
                   d   
     hg03819   298 D    298  

SM00320: domain 2 of 5, from 305 to 348: score 16.4, E = 1.3
                   *->t.kllrtlk..gHtgespVtsvafspdggssdspnllasgs.Dgtir
                      t+ +   l+  +Ht+  pV++v +  + ++    + l+s s+Dg+i+
     hg03819   305    TpVQRTPLSaaAHTH--PVYCVNVVGTQNA----HNLISIStDGKIC 345  

                   lWd<-*
                    W+   
     hg03819   346 SWS    348  

SM00320: domain 3 of 5, from 402 to 447: score 24.7, E = 0.013
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +      ++gH+g  p+t++  +   g+ d ++l++++s D t++lW
     hg03819   402    KaGISEMFEGHQG--PITGIHCHAAVGAVDFSHLFVTSSfDWTVKLW 446  

                   d<-*
                       
     hg03819   447 T    447  

SM00320: domain 4 of 5, from 450 to 490: score 19.5, E = 0.41
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k+l++++   +  +V++v +sp++     p l+a+ ++ g + lW
     hg03819   450    NnKPLYSFEDNAD--YVYDVMWSPTH-----PALFACVDgMGRLDLW 489  

                   d<-*
                   +   
     hg03819   490 N    490  

SM00320: domain 5 of 5, from 495 to 535: score 15.8, E = 1.5
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t  ++++++  +g+ + + v++ ++g      + +a+g++ g+i ++
     hg03819   495    TeVPTASIS-VEGNPALNRVRWTHSG------REIAVGDsEGQIVIY 534  

                   d<-*
                   d   
     hg03819   535 D    535  

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