hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-03284353/chunk_1/iprscan-20080812-03284353.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hg03832
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00036.22.fs EF hand                                         74.9    2.2e-19   4
PF00036.22.ls EF hand                                         64.4    3.5e-16   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00036.22.fs   2/4      69    97 ..     1    29 []    28.2  1.2e-06
PF00036.22.ls   1/2      69    97 ..     1    29 []    30.2  6.6e-06
PF00036.22.fs   3/4     105   133 ..     1    29 []    32.2    1e-07
PF00036.22.ls   2/2     105   133 ..     1    29 []    34.2  4.3e-07
PF00036.22.fs   4/4     153   169 ..     1    17 [.    11.1    0.058

Alignments of top-scoring domains:
PF00036.22.fs: domain 2 of 4, from 69 to 97: score 28.2, E = 1.2e-06
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       ++ +F+ fD++gDG+I+f Ef+ al+ +   
     hg03832    69    FAEHVFRTFDANGDGTIDFREFIIALSVT    97   

PF00036.22.ls: domain 1 of 2, from 69 to 97: score 30.2, E = 6.6e-06
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       ++ +F+ fD++gDG+I+f Ef+ al+ +   
     hg03832    69    FAEHVFRTFDANGDGTIDFREFIIALSVT    97   

PF00036.22.fs: domain 3 of 4, from 105 to 133: score 32.2, E = 1e-07
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      +lk aF+++D Dg+G+Is+ E++++++++   
     hg03832   105    KLKWAFSMYDLDGNGYISKAEMLEIVQAI    133  

PF00036.22.ls: domain 2 of 2, from 105 to 133: score 34.2, E = 4.3e-07
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                      +lk aF+++D Dg+G+Is+ E++++++++   
     hg03832   105    KLKWAFSMYDLDGNGYISKAEMLEIVQAI    133  

PF00036.22.fs: domain 4 of 4, from 153 to 169: score 11.1, E = 0.058
                   *->elkeaFkefDkDgDGkI<-*
                      + +++F+++D+++DG++   
     hg03832   153    RTEKIFRQMDTNRDGQL    169  

//