hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-03344188/chunk_1/iprscan-20080812-03344188.nocrc
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Query sequence: hg03909
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
PF00520.21.fs Ion transport protein                         477.0   2.1e-140   3
PF00520.21.ls Ion transport protein                         455.9   4.7e-134   2

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
PF00520.21.fs   1/3     119   313 ..     1   224 []   211.3  2.1e-60
PF00520.21.ls   1/2     119   313 ..     1   224 []   213.1  5.9e-61
PF00520.21.fs   2/3     496   726 ..     1   224 []   241.0  2.4e-69
PF00520.21.ls   2/2     496   726 ..     1   224 []   242.8  6.7e-70
PF00520.21.fs   3/3     814   839 ..     1    26 [.    24.7  1.4e-06

Alignments of top-scoring domains:
PF00520.21.fs: domain 1 of 3, from 119 to 313: score 211.3, E = 2.1e-60
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                       ++ +  ++Ft+Emllk+++lg+       ++Y+ s +N++D++vv 
     hg03909   119    TANKALLALFTAEMLLKMYSLGL-------QAYFVSLFNRFDCFVVC 158  

                   pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL
                   +++++ il++++++               s+ g    +svlr++RllR  
     hg03909   159 GGILETILVETKIM---------------SPlG----ISVLRCVRLLR-- 187  

                   RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii
                    +++++r++ +     l++l  + sl++s++s++++llll+l+++iF+++
     hg03909   188 -IFKITRYWNS-----LSNL--VASLLNSVRSIASLLLLLFLFIIIFSLL 229  

                   gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl.
                   g+qlFggk+n ++    +++ Fd+f++++l++Fq++T+e+w+ vm+d++ 
     hg03909   230 GMQLFGGKFNFDE-MQTRRSTFDNFPQSLLTVFQILTGEDWNSVMYDGIm 278  

                   ......agtvlgyiyfvsfiilgsflllNLfiavi<-*
                     +++++ ++l +iyf++++i+g+++llN+f+a+    
     hg03909   279 ayggpsFPGMLVCIYFIILFICGNYILLNVFLAIA    313  

PF00520.21.ls: domain 1 of 2, from 119 to 313: score 213.1, E = 5.9e-61
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                       ++ +  ++Ft+Emllk+++lg+       ++Y+ s +N++D++vv 
     hg03909   119    TANKALLALFTAEMLLKMYSLGL-------QAYFVSLFNRFDCFVVC 158  

                   pslislilsllgggsegdlyvreskdstlse.gspgllsvlrllRllRvL
                   +++++ il++++++               s+ g    +svlr++RllR  
     hg03909   159 GGILETILVETKIM---------------SPlG----ISVLRCVRLLR-- 187  

                   RllrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaii
                    +++++r++ +     l++l  + sl++s++s++++llll+l+++iF+++
     hg03909   188 -IFKITRYWNS-----LSNL--VASLLNSVRSIASLLLLLFLFIIIFSLL 229  

                   gvqlFggklnkccnpingntnFdsfgnaflwlFqtmTteGwgdvmpdtl.
                   g+qlFggk+n ++    +++ Fd+f++++l++Fq++T+e+w+ vm+d++ 
     hg03909   230 GMQLFGGKFNFDE-MQTRRSTFDNFPQSLLTVFQILTGEDWNSVMYDGIm 278  

                   ......agtvlgyiyfvsfiilgsflllNLfiavi<-*
                     +++++ ++l +iyf++++i+g+++llN+f+a+    
     hg03909   279 ayggpsFPGMLVCIYFIILFICGNYILLNVFLAIA    313  

PF00520.21.fs: domain 2 of 3, from 496 to 726: score 241.0, E = 2.4e-69
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                       +dyvft+iFtlE++lk+ a+g +lh   +++++r+++NilD+lvv 
     hg03909   496    NADYVFTSIFTLEIILKMTAYGAFLH---KGSFCRNYFNILDLLVVS 539  

                   pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR
                   +slis+  +++                         ++v+++lR+lRvLR
     hg03909   540 VSLISFGIQSSA------------------------INVVKILRVLRVLR 565  

                   llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig
                   +lr+i+ra+g     l+++  +++++++++ ++n+++++ ll f+Fa+ig
     hg03909   566 PLRAINRAKG-----LKHV--VQCVFVAIRTIGNIVIVTTLLQFMFACIG 608  

                   vqlFggklnkcc..............................npingntn
                   vqlF+gkl++c ++++ ++ +++++  + ++++ +++   +  ++n+++ 
     hg03909   609 VQLFKGKLYTCSdsskqteaeckgnyitykdgevdhpiiqprSWENSKFD 658  

                   FdsfgnaflwlFqtmTteGwgdvmpdtl...........agtvlgyiyfv
                   Fd+++ a+++lF+++T+eGw+++++ +++++++++++  +++v   i+f+
     hg03909   659 FDNVLAAMMALFTVSTFEGWPELLYRSIdshtedkgpiyNYRVEISIFFI 708  

                   sfiilgsflllNLfiavi<-*
                   ++ii+++f+++N+f++ +   
     hg03909   709 IYIIIIAFFMMNIFVGFV    726  

PF00520.21.ls: domain 2 of 2, from 496 to 726: score 242.8, E = 6.7e-70
                   *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl
                       +dyvft+iFtlE++lk+ a+g +lh   +++++r+++NilD+lvv 
     hg03909   496    NADYVFTSIFTLEIILKMTAYGAFLH---KGSFCRNYFNILDLLVVS 539  

                   pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR
                   +slis+  +++                         ++v+++lR+lRvLR
     hg03909   540 VSLISFGIQSSA------------------------INVVKILRVLRVLR 565  

                   llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig
                   +lr+i+ra+g     l+++  +++++++++ ++n+++++ ll f+Fa+ig
     hg03909   566 PLRAINRAKG-----LKHV--VQCVFVAIRTIGNIVIVTTLLQFMFACIG 608  

                   vqlFggklnkcc..............................npingntn
                   vqlF+gkl++c ++++ ++ +++++  + ++++ +++   +  ++n+++ 
     hg03909   609 VQLFKGKLYTCSdsskqteaeckgnyitykdgevdhpiiqprSWENSKFD 658  

                   FdsfgnaflwlFqtmTteGwgdvmpdtl...........agtvlgyiyfv
                   Fd+++ a+++lF+++T+eGw+++++ +++++++++++  +++v   i+f+
     hg03909   659 FDNVLAAMMALFTVSTFEGWPELLYRSIdshtedkgpiyNYRVEISIFFI 708  

                   sfiilgsflllNLfiavi<-*
                   ++ii+++f+++N+f++ +   
     hg03909   709 IYIIIIAFFMMNIFVGFV    726  

PF00520.21.fs: domain 3 of 3, from 814 to 839: score 24.7, E = 1.4e-06
                   *->ildyvftviFtlEmllkiialgfklh<-*
                      il+++ft++Ft+Em+lk+ia+ +k++   
     hg03909   814    ILNMLFTGLFTVEMILKLIAFKPKVG    839  

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