hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-03411431/chunk_1/iprscan-20080812-03411431.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hg04036 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08454.1.fs RyR and IP3R Homology associated 920.0 9.1e-274 2 PF08454.1.ls RyR and IP3R Homology associated 730.9 8e-217 1 PF00520.21.fs Ion transport protein 62.0 5.6e-17 1 PF00520.21.ls Ion transport protein 63.8 5.2e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08454.1.ls 1/1 1 533 [. 1 725 [] 730.9 8e-217 PF08454.1.fs 1/2 31 150 .. 218 344 .. 220.1 3.7e-63 PF08454.1.fs 2/2 188 533 .. 343 725 .] 699.9 1.6e-207 PF00520.21.ls 1/1 820 1046 .. 1 224 [] 63.8 5.2e-16 PF00520.21.fs 1/1 820 1046 .. 1 224 [] 62.0 5.6e-17 Alignments of top-scoring domains: PF08454.1.ls: domain 1 of 1, from 1 to 533: score 730.9, E = 8e-217 *->LLaACteGKNvyTEIKCnsLLPlddivrvvthqdcipevKeaYinFL C + hg04036 1 ----CSQ---------------------------------------- 3 nHCyiDTEvEmKEiyksnhiLpdKldpdsmrWqLFEKnflvDigrvlnat h hg04036 4 ---------------EPGHC------------------------------ 8 kdekhadktlEkyvtnevanvlthffnrkhSpFselsdqstplqtrqpvf ++ hg04036 9 -------------------------HS----------------------- 10 vkLLqsafrlsqckwlskqrKraWYRVeaCiRtltlygvARhRaInlPvd +++ + + l++ v+ h hg04036 11 ---------------RGPGQPSQ--------QPLSQ--VPQH-------- 27 LdsqvnslfsktaskaflqryaskWletekghrrrdsnsaisrdgrniiE + +a++W++ +++++rrds++a srd+rniiE hg04036 28 -----------------CAETAMNWRLSARNAARRDSVLAASRDYRNIIE 60 glqDlvsslEdqlkPLvqAElSVLVDvLyrPELLfpegsEarekcesgdf +lqD+vs+lEd+l+PLvqAElSVLVDvL+rPELLfpe+++ar+kcesg+f hg04036 61 RLQDIVSALEDRLRPLVQAELSVLVDVLHRPELLFPENTDARRKCESGGF 110 lskLIkhtkklleeeeelagkLciFekvLYqtLaemmaksckhyee.... ++kLIkhtk+llee+ee kLc +kvL qtL+emm+k+ +y+e+ + hg04036 111 ICKLIKHTKQLLEENEE---KLC--IKVL-QTLREMMTKDR-GYGEklis 153 ...................................eGdalrqlLLqRYfg ++ ++ + ++ +++++ +++ +++++ ++ +++++G+alrq L++RY+g hg04036 154 ideldnaelppapdsenateelepspplrqledhkRGEALRQVLVNRYYG 203 eeselsfpedelpsgigplvepgkekksa.ggpsa.eekerekqkLlevQ + + + ++e+++++g+gpl+ +g++k++++gg+s++ +++r +++L+evQ hg04036 204 NVRPSGRRESLTSFGNGPLSAGGPGKPGGgGGGSGsSSMSRGEMSLAEVQ 253 crLdkeGAaeLVldlisaskgepgeifvealeLGIALLeGGNteiQksml c+LdkeGA++LV+dli++ ++++ +f+e++ L+IALLeGGNt+iQ+s++ hg04036 254 CHLDKEGASNLVIDLIMNASSDR--VFHESILLAIALLEGGNTTIQHSFF 301 nyLkedkkderFFkvladrMksAQqEiKsTVTVntlDwLgafereekevv ++L edkk+e+FFkv++drMk AQqEiK+TVTVnt+D Lg+++++++ v+ hg04036 302 CRLTEDKKSEKFFKVFYDRMKVAQQEIKATVTVNTSD-LGNKKKDDE-VD 349 setgkrrrnvsnaheaegkSlglvneegtkeeLyeaalatskayinsrrl +++++r++ a++ ++++e+++++L+ea++at+ka++++rr+ hg04036 350 RDAPSRKK-------AKE--PTTQITEEVRDQLLEASAATRKAFTTFRRE 390 asgdldhsilvlapleavdiLAEKLEKrederkegeklsndvefmqpllR a++d dh+++++++++ +d++k++ ++s+ +++mqp+lR hg04036 391 ADPD-DHYQPGEGTQAT-----------ADKAKDDLEMSAVITIMQPILR 428 FLQLLCENHNldLQNyLRtQagNkTNvNLVseTLdFLLRLQDcICGFYWh FLQLLCENHN+dLQN+LR+Q +NkTN+NLV+eTL+FL DcICG hg04036 429 FLQLLCENHNRDLQNFLRCQ-NNKTNYNLVCETLQFL----DCICG---- 469 YSTtGgLgllGlyinekNvsLinQtLeTLTEYCQGPCheNQnciAtHRLW STtGgLgllGlyinekNv+LinQtLe+LTEYCQGPCheNQnciAtH hg04036 470 -STTGGLGLLGLYINEKNVALINQTLESLTEYCQGPCHENQNCIATH--- 515 DesNGldiitAliLndinp<-* esNG+diitAliLndinp hg04036 516 -ESNGIDIITALILNDINP 533 PF08454.1.fs: domain 1 of 2, from 31 to 150: score 220.1, E = 3.7e-63 *->yaskWletekghrrrdsnsaisrdgrniiEglqDlvsslEdqlkPLv +a++W++ +++++rrds++a srd+rniiE+lqD+vs+lEd+l+PLv hg04036 31 TAMNWRLSARNAARRDSVLAASRDYRNIIERLQDIVSALEDRLRPLV 77 qAElSVLVDvLyrPELLfpegsEarekcesgdflskLIkhtkklleeeee qAElSVLVDvL+rPELLfpe+++ar+kcesg+f++kLIkhtk+llee+ee hg04036 78 QAELSVLVDVLHRPELLFPENTDARRKCESGGFICKLIKHTKQLLEENEE 127 lagkLciFekvLYqtLaemmaksckhyeee<-* kLc +kvL qtL+emm+k+ +y+e+ hg04036 128 ---KLC--IKVL-QTLREMMTKDR-GYGEK 150 PF08454.1.fs: domain 2 of 2, from 188 to 533: score 699.9, E = 1.6e-207 *->eeGdalrqlLLqRYfgeeselsfpedelpsgigplvepgkekksa.g ++G+alrq L++RY+g+ + + ++e+++++g+gpl+ +g++k++++g hg04036 188 KRGEALRQVLVNRYYGNVRPSGRRESLTSFGNGPLSAGGPGKPGGgG 234 gpsa.eekerekqkLlevQcrLdkeGAaeLVldlisaskgepgeifveal g+s++ +++r +++L+evQc+LdkeGA++LV+dli++ ++++ +f+e++ hg04036 235 GGSGsSSMSRGEMSLAEVQCHLDKEGASNLVIDLIMNASSDR--VFHESI 282 eLGIALLeGGNteiQksmlnyLkedkkderFFkvladrMksAQqEiKsTV L+IALLeGGNt+iQ+s++++L edkk+e+FFkv++drMk AQqEiK+TV hg04036 283 LLAIALLEGGNTTIQHSFFCRLTEDKKSEKFFKVFYDRMKVAQQEIKATV 332 TVntlDwLgafereekevvsetgkrrrnvsnaheaegkSlglvneegtke TVnt+D Lg+++++++ v++++++r++ a++ ++++e++++ hg04036 333 TVNTSD-LGNKKKDDE-VDRDAPSRKK-------AKE--PTTQITEEVRD 371 eLyeaalatskayinsrrlasgdldhsilvlapleavdiLAEKLEKrede +L+ea++at+ka++++rr+a++d dh+++++++++ +d+ hg04036 372 QLLEASAATRKAFTTFRREADPD-DHYQPGEGTQAT-----------ADK 409 rkegeklsndvefmqpllRFLQLLCENHNldLQNyLRtQagNkTNvNLVs +k++ ++s+ +++mqp+lRFLQLLCENHN+dLQN+LR+Q +NkTN+NLV+ hg04036 410 AKDDLEMSAVITIMQPILRFLQLLCENHNRDLQNFLRCQ-NNKTNYNLVC 458 eTLdFLLRLQDcICGFYWhYSTtGgLgllGlyinekNvsLinQtLeTLTE eTL+FL DcICG STtGgLgllGlyinekNv+LinQtLe+LTE hg04036 459 ETLQFL----DCICG-----STTGGLGLLGLYINEKNVALINQTLESLTE 499 YCQGPCheNQnciAtHRLWDesNGldiitAliLndinp<-* YCQGPCheNQnciAtH esNG+diitAliLndinp hg04036 500 YCQGPCHENQNCIATH----ESNGIDIITALILNDINP 533 PF00520.21.ls: domain 1 of 1, from 820 to 1046: score 63.8, E = 5.2e-16 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl + ++f + F+ + ++++ ++ +l + + +++ + hg04036 820 CNKIIFLMSFVGNCGTFTRGYRAMVL---DVEFLYHLLY--LVICAM 861 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR ++++ ++ +l hg04036 862 GLFVHEFFYSLL-------------------------------------- 873 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig l+ l+ r ++ l ++ ++s++r +s++ ++l l+l++ F+i+g hg04036 874 LFDLVYREET-----LLNV--IKSVTRDGRSIILTAVLALILVYLFSIVG 916 vqlFggklnkcc...................................... +++F++ + +++ ++++ ++++++ ++ ++ + +++++++++ hg04036 917 YLFFKDDFILEVdrlpnetavpetgeslaseflfsdvcrvesgencsspa 966 ........npingntnFdsfgnaflwlFqtmTteGwgdvmpdtl...... + ++ + ++ +++ ++ ++ +++++ + g+ + d+l++++++ hg04036 967 preelvpaEETEQDKEHTCETLLMCIVTVLSHGLRSGGGVGDVLrkpske 1016 .agtvlgyiyfvsfiilgsflllNLfiavi<-* + ++ +iy ++f++++++++lNL+++vi hg04036 1017 ePLFAARVIYDLLFFFMVIIIVLNLIFGVI 1046 PF00520.21.fs: domain 1 of 1, from 820 to 1046: score 62.0, E = 5.6e-17 *->ildyvftviFtlEmllkiialgfklhsriafkYlrspwNilDflvvl + ++f + F+ + ++++ ++ +l + + +++ + hg04036 820 CNKIIFLMSFVGNCGTFTRGYRAMVL---DVEFLYHLLY--LVICAM 861 pslislilsllgggsegdlyvreskdstlsegspgllsvlrllRllRvLR ++++ ++ +l hg04036 862 GLFVHEFFYSLL-------------------------------------- 873 llrlirrapglfRWelrtlWelnslgrslksllnvllllllllfiFaiig l+ l+ r ++ l ++ ++s++r +s++ ++l l+l++ F+i+g hg04036 874 LFDLVYREET-----LLNV--IKSVTRDGRSIILTAVLALILVYLFSIVG 916 vqlFggklnkcc...................................... +++F++ + +++ ++++ ++++++ ++ ++ + +++++++++ hg04036 917 YLFFKDDFILEVdrlpnetavpetgeslaseflfsdvcrvesgencsspa 966 ........npingntnFdsfgnaflwlFqtmTteGwgdvmpdtl...... + ++ + ++ +++ ++ ++ +++++ + g+ + d+l++++++ hg04036 967 preelvpaEETEQDKEHTCETLLMCIVTVLSHGLRSGGGVGDVLrkpske 1016 .agtvlgyiyfvsfiilgsflllNLfiavi<-* + ++ +iy ++f++++++++lNL+++vi hg04036 1017 ePLFAARVIYDLLFFFMVIIIVLNLIFGVI 1046 //