# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohg04050.fasta.nr -Q hg04050.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hg04050, 225 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6840401 sequences Expectation_n fit: rho(ln(x))= 4.9154+/-0.000183; mu= 10.0152+/- 0.010 mean_var=69.3036+/-13.638, 0's: 40 Z-trim: 55 B-trim: 196 in 1/66 Lambda= 0.154062 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|20455288|sp|Q9H190|SDCB2_HUMAN Syntenin-2 (Synd ( 292) 1430 326.2 2.8e-87 gi|12227259|emb|CAC21716.1| syntenin-2alpha [Homo ( 292) 1426 325.4 5.1e-87 gi|114680980|ref|XP_001167866.1| PREDICTED: simila ( 369) 1377 314.5 1.2e-83 gi|119631044|gb|EAX10639.1| syndecan binding prote ( 282) 1363 311.3 8.2e-83 gi|11182148|emb|CAC16178.1| syndecan binding prote ( 207) 1359 310.3 1.2e-82 gi|109092570|ref|XP_001112885.1| PREDICTED: syndec ( 292) 1359 310.5 1.6e-82 gi|4406642|gb|AAD20049.1| Unknown [Homo sapiens] ( 207) 1355 309.5 2.2e-82 gi|109092574|ref|XP_001112910.1| PREDICTED: syndec ( 207) 1296 296.3 2e-78 gi|119905792|ref|XP_875149.2| PREDICTED: similar t ( 292) 1279 292.7 3.5e-77 gi|20455287|sp|Q99JZ0.1|SDCB2_MOUSE Syntenin-2 (Sy ( 292) 1226 280.9 1.2e-73 gi|148673971|gb|EDL05918.1| syndecan binding prote ( 314) 1226 280.9 1.3e-73 gi|149733151|ref|XP_001498897.1| PREDICTED: simila ( 292) 1224 280.5 1.7e-73 gi|68533990|gb|AAH99095.1| Syndecan binding protei ( 296) 1224 280.5 1.7e-73 gi|73992042|ref|XP_542935.2| PREDICTED: similar to ( 287) 1173 269.1 4.3e-70 gi|126294003|ref|XP_001367355.1| PREDICTED: simila ( 292) 1159 266.0 3.8e-69 gi|74267862|gb|AAI03012.1| Syndecan binding protei ( 298) 1010 232.9 3.6e-59 gi|146231800|gb|ABQ12975.1| syntenin [Bos taurus] ( 298) 1008 232.5 4.8e-59 gi|74151625|dbj|BAE41161.1| unnamed protein produc ( 299) 1008 232.5 4.9e-59 gi|53136872|emb|CAG32765.1| hypothetical protein [ ( 294) 1004 231.6 8.9e-59 gi|149061026|gb|EDM11636.1| syndecan binding prote ( 242) 1003 231.3 8.9e-59 gi|74177981|dbj|BAE29785.1| unnamed protein produc ( 299) 1003 231.3 1e-58 gi|20455282|sp|O08992|SDCB1_MOUSE Syntenin-1 (Synd ( 299) 1003 231.3 1e-58 gi|74151707|dbj|BAE29647.1| unnamed protein produc ( 299) 1003 231.3 1e-58 gi|20455280|sp|Q9JI92|SDCB1_RAT Syntenin-1 (Syndec ( 300) 1003 231.3 1.1e-58 gi|148673740|gb|EDL05687.1| mCG4375, isoform CRA_a ( 329) 1003 231.4 1.1e-58 gi|74178036|dbj|BAE29811.1| unnamed protein produc ( 298) 1002 231.1 1.2e-58 gi|55749515|ref|NP_001007070.1| syntenin isoform 3 ( 297) 1001 230.9 1.4e-58 gi|67967968|dbj|BAE00466.1| unnamed protein produc ( 297) 1001 230.9 1.4e-58 gi|74139764|dbj|BAE31729.1| unnamed protein produc ( 299) 1001 230.9 1.4e-58 gi|74181503|dbj|BAE30020.1| unnamed protein produc ( 299) 1001 230.9 1.4e-58 gi|109086490|ref|XP_001088096.1| PREDICTED: simila ( 304) 1001 230.9 1.4e-58 gi|119607218|gb|EAW86812.1| syndecan binding prote ( 318) 1001 230.9 1.5e-58 gi|28856232|gb|AAH48018.1| MGC52622 protein [Xenop ( 290) 1000 230.7 1.6e-58 gi|149721380|ref|XP_001496922.1| PREDICTED: syndec ( 293) 999 230.5 1.9e-58 gi|149721378|ref|XP_001496903.1| PREDICTED: syndec ( 299) 999 230.5 1.9e-58 gi|114620254|ref|XP_001157154.1| PREDICTED: simila ( 242) 997 229.9 2.3e-58 gi|55729577|emb|CAH91518.1| hypothetical protein [ ( 297) 998 230.2 2.3e-58 gi|109086494|ref|XP_001088209.1| PREDICTED: simila ( 292) 997 230.0 2.6e-58 gi|194374045|dbj|BAG62335.1| unnamed protein produ ( 292) 997 230.0 2.6e-58 gi|1916850|gb|AAB51246.1| scaffold protein Pbp1 [H ( 298) 997 230.0 2.6e-58 gi|20455281|sp|O00560|SDCB1_HUMAN Syntenin-1 (Synd ( 298) 997 230.0 2.6e-58 gi|2795863|gb|AAB97144.1| syntenin [Homo sapiens] ( 298) 997 230.0 2.6e-58 gi|74225528|dbj|BAE31671.1| unnamed protein produc ( 299) 997 230.0 2.6e-58 gi|3342560|gb|AAC27646.1| syntenin [Mus musculus] ( 298) 996 229.8 3.1e-58 gi|74192974|dbj|BAE34989.1| unnamed protein produc ( 298) 996 229.8 3.1e-58 gi|74197963|dbj|BAE35165.1| unnamed protein produc ( 298) 994 229.3 4.2e-58 gi|55731523|emb|CAH92473.1| hypothetical protein [ ( 298) 994 229.3 4.2e-58 gi|74221978|dbj|BAE31548.1| unnamed protein produc ( 299) 994 229.3 4.2e-58 gi|194384898|dbj|BAG60855.1| unnamed protein produ ( 266) 993 229.1 4.5e-58 gi|74151923|dbj|BAE29746.1| unnamed protein produc ( 298) 991 228.7 6.6e-58 >>gi|20455288|sp|Q9H190|SDCB2_HUMAN Syntenin-2 (Syndecan (292 aa) initn: 1430 init1: 1430 opt: 1430 Z-score: 1722.2 bits: 326.2 E(): 2.8e-87 Smith-Waterman score: 1430; 100.000% identity (100.000% similar) in 217 aa overlap (9-225:76-292) 10 20 30 hg0405 PPAPWCLQTAVSGPGPGQMVAPVTGYSLGVRRAEIKPG :::::::::::::::::::::::::::::: gi|204 NLAELENYMGLSLSSQEVQESLLQIPEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPG 50 60 70 80 90 100 40 50 60 70 80 90 hg0405 VREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|204 VREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSS 110 120 130 140 150 160 100 110 120 130 140 150 hg0405 HKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|204 HKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNG 170 180 190 200 210 220 160 170 180 190 200 210 hg0405 LLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|204 LLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTM 230 240 250 260 270 280 220 hg0405 DHSIPDA ::::::: gi|204 DHSIPDA 290 >>gi|12227259|emb|CAC21716.1| syntenin-2alpha [Homo sapi (292 aa) initn: 1426 init1: 1426 opt: 1426 Z-score: 1717.4 bits: 325.4 E(): 5.1e-87 Smith-Waterman score: 1426; 99.539% identity (100.000% similar) in 217 aa overlap (9-225:76-292) 10 20 30 hg0405 PPAPWCLQTAVSGPGPGQMVAPVTGYSLGVRRAEIKPG :::::::::::::::::::::::::::::: gi|122 NLAELENYMGLSLSSQEVQESLLHIPEGDSTAVSGPGPGQMVAPVTGYSLGVRRAEIKPG 50 60 70 80 90 100 40 50 60 70 80 90 hg0405 VREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 VREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSS 110 120 130 140 150 160 100 110 120 130 140 150 hg0405 HKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNG ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|122 HKAHQVVKKASGDKIVMVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNG 170 180 190 200 210 220 160 170 180 190 200 210 hg0405 LLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|122 LLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTM 230 240 250 260 270 280 220 hg0405 DHSIPDA ::::::: gi|122 DHSIPDA 290 >>gi|114680980|ref|XP_001167866.1| PREDICTED: similar to (369 aa) initn: 1377 init1: 1377 opt: 1377 Z-score: 1657.1 bits: 314.5 E(): 1.2e-83 Smith-Waterman score: 1377; 97.235% identity (98.618% similar) in 217 aa overlap (9-225:153-369) 10 20 30 hg0405 PPAPWCLQTAVSGPGPGQMVAPVTGYSLGVRRAEIKPG ::::: :: ::::::::::::::::::::: gi|114 NLAELENYMGLSLSSQEVQQSLLQIPEGDSTAVSGLGPRQMVAPVTGYSLGVRRAEIKPG 130 140 150 160 170 180 40 50 60 70 80 90 hg0405 VREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSS ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: gi|114 VREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQILQIDGRDCAGWSS 190 200 210 220 230 240 100 110 120 130 140 150 hg0405 HKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNG ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|114 HKAHQVVKKASGDKIVMVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNG 250 260 270 280 290 300 160 170 180 190 200 210 hg0405 LLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTM ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::.:: gi|114 LLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLSPVLLHRTM 310 320 330 340 350 360 220 hg0405 DHSIPDA ::::::: gi|114 DHSIPDA >>gi|119631044|gb|EAX10639.1| syndecan binding protein ( (282 aa) initn: 1359 init1: 1359 opt: 1363 Z-score: 1641.9 bits: 311.3 E(): 8.2e-83 Smith-Waterman score: 1363; 98.113% identity (98.585% similar) in 212 aa overlap (14-225:71-282) 10 20 30 40 hg0405 PPAPWCLQTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIH : .::::::::::::::::::::::::: gi|119 PVLYPNLAELENYMGLSLSSQEVQESLLQIPEGDSMVAPVTGYSLGVRRAEIKPGVREIH 50 60 70 80 90 100 50 60 70 80 90 100 hg0405 LCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 LCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQ 110 120 130 140 150 160 110 120 130 140 150 160 hg0405 VVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 VVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNH 170 180 190 200 210 220 170 180 190 200 210 220 hg0405 YVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 YVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIP 230 240 250 260 270 280 hg0405 DA :: gi|119 DA >>gi|11182148|emb|CAC16178.1| syndecan binding protein ( (207 aa) initn: 1359 init1: 1359 opt: 1359 Z-score: 1638.9 bits: 310.3 E(): 1.2e-82 Smith-Waterman score: 1359; 100.000% identity (100.000% similar) in 207 aa overlap (19-225:1-207) 10 20 30 40 50 60 hg0405 PPAPWCLQTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVD :::::::::::::::::::::::::::::::::::::::::: gi|111 MVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVD 10 20 30 40 70 80 90 100 110 120 hg0405 QGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|111 QGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDR 50 60 70 80 90 100 130 140 150 160 170 180 hg0405 PFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|111 PFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKK 110 120 130 140 150 160 190 200 210 220 hg0405 IMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA ::::::::::::::::::::::::::::::::::::::::::::: gi|111 IMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA 170 180 190 200 >>gi|109092570|ref|XP_001112885.1| PREDICTED: syndecan b (292 aa) initn: 1359 init1: 1359 opt: 1359 Z-score: 1636.9 bits: 310.5 E(): 1.6e-82 Smith-Waterman score: 1359; 95.392% identity (98.618% similar) in 217 aa overlap (9-225:76-292) 10 20 30 hg0405 PPAPWCLQTAVSGPGPGQMVAPVTGYSLGVRRAEIKPG ::::::.::::::::.:::::::::::::: gi|109 NLAELENYMGLSLSSQEVQQSLLQIPEGDSTAVSGPAPGQMVAPVSGYSLGVRRAEIKPG 50 60 70 80 90 100 40 50 60 70 80 90 hg0405 VREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSS ::::::::::::::::::: ::::::::::::::::::::::::::.::::::::::::: gi|109 VREIHLCKDERGKTGLRLRTVDQGLFVQLVQANTPASLVGLRFGDQILQIDGRDCAGWSS 110 120 130 140 150 160 100 110 120 130 140 150 hg0405 HKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNG .::.::::::: .:::.::::::::::::::::::::::::::::::::::::::::::: gi|109 RKANQVVKKASPEKIVMVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNG 170 180 190 200 210 220 160 170 180 190 200 210 hg0405 LLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTM ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: gi|109 LLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLSPVLLHHTM 230 240 250 260 270 280 220 hg0405 DHSIPDA ::::::: gi|109 DHSIPDA 290 >>gi|4406642|gb|AAD20049.1| Unknown [Homo sapiens] g (207 aa) initn: 1355 init1: 1355 opt: 1355 Z-score: 1634.1 bits: 309.5 E(): 2.2e-82 Smith-Waterman score: 1355; 99.517% identity (100.000% similar) in 207 aa overlap (19-225:1-207) 10 20 30 40 50 60 hg0405 PPAPWCLQTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVD :::::::::::::::::::::::::::::::::::::::::: gi|440 MVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVD 10 20 30 40 70 80 90 100 110 120 hg0405 QGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDR ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|440 QGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVMVVRDR 50 60 70 80 90 100 130 140 150 160 170 180 hg0405 PFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|440 PFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKK 110 120 130 140 150 160 190 200 210 220 hg0405 IMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA ::::::::::::::::::::::::::::::::::::::::::::: gi|440 IMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA 170 180 190 200 >>gi|109092574|ref|XP_001112910.1| PREDICTED: syndecan b (207 aa) initn: 1296 init1: 1296 opt: 1296 Z-score: 1563.3 bits: 296.3 E(): 2e-78 Smith-Waterman score: 1296; 95.652% identity (98.551% similar) in 207 aa overlap (19-225:1-207) 10 20 30 40 50 60 hg0405 PPAPWCLQTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRKVD :::::.::::::::::::::::::::::::::::::::: :: gi|109 MVAPVSGYSLGVRRAEIKPGVREIHLCKDERGKTGLRLRTVD 10 20 30 40 70 80 90 100 110 120 hg0405 QGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVRDR ::::::::::::::::::::::::.:::::::::::::.::.::::::: .:::.::::: gi|109 QGLFVQLVQANTPASLVGLRFGDQILQIDGRDCAGWSSRKANQVVKKASPEKIVMVVRDR 50 60 70 80 90 100 130 140 150 160 170 180 hg0405 PFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 PFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLLTNHYVCEVDGQNVIGLKDKK 110 120 130 140 150 160 190 200 210 220 hg0405 IMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDHSIPDA ::::::::::::::::::::::::::::: ::::::::::::::: gi|109 IMEILATAGNVVTLTIIPSVIYEHMVKKLSPVLLHHTMDHSIPDA 170 180 190 200 >>gi|119905792|ref|XP_875149.2| PREDICTED: similar to Sy (292 aa) initn: 1279 init1: 1279 opt: 1279 Z-score: 1540.8 bits: 292.7 E(): 3.5e-77 Smith-Waterman score: 1279; 85.780% identity (96.789% similar) in 218 aa overlap (7-224:74-291) 10 20 30 hg0405 PPAPWCLQTAVSGPGPGQMVAPVTGYSLGVRRAEIK :..:::::.:::.::::.: :::. ::::: gi|119 ERHSPSIPRPRPKPYPGCLLCQYGEKGTPSLHAAVSGPSPGQVVAPVSGNSLGALRAEIK 50 60 70 80 90 100 40 50 60 70 80 90 hg0405 PGVREIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGW ::::::::::::::::::::. .:.:.:::::::::::::::::::::.::::::::::: gi|119 PGVREIHLCKDERGKTGLRLQAIDKGIFVQLVQANTPASLVGLRFGDQILQIDGRDCAGW 110 120 130 140 150 160 100 110 120 130 140 150 hg0405 SSHKAHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAAR :. ::::::::::..:::..:::::::::.:::::: ::::::::::::.:::::::::: gi|119 STDKAHQVVKKASAEKIVIIVRDRPFQRTITMHKDSTGHVGFVIKKGKIISLVKGSSAAR 170 180 190 200 210 220 160 170 180 190 200 210 hg0405 NGLLTNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHH ::::::::::::.::::::::::.. :::::::::.::::::.:::::::::: :.:::: gi|119 NGLLTNHYVCEVNGQNVIGLKDKEVTEILATAGNVITLTIIPTVIYEHMVKKLSPTLLHH 230 240 250 260 270 280 220 hg0405 TMDHSIPDA :::::::: gi|119 TMDHSIPDV 290 >>gi|20455287|sp|Q99JZ0.1|SDCB2_MOUSE Syntenin-2 (Syndec (292 aa) initn: 1226 init1: 1226 opt: 1226 Z-score: 1477.1 bits: 280.9 E(): 1.2e-73 Smith-Waterman score: 1226; 83.178% identity (96.262% similar) in 214 aa overlap (11-224:78-291) 10 20 30 40 hg0405 PPAPWCLQTAVSGPGPGQMVAPVTGYSLGVRRAEIKPGVR :..:::::.::::.: .::. ::::::::: gi|204 AELESYMGLSLSSQEVQKNLTQIPDSDNMVVTSPGPGQVVAPVSGNNLGILRAEIKPGVR 50 60 70 80 90 100 50 60 70 80 90 100 hg0405 EIHLCKDERGKTGLRLRKVDQGLFVQLVQANTPASLVGLRFGDQLLQIDGRDCAGWSSHK ::::::::::::::::. ::.:::::::::::::::::::::::.::::: :::::..:: gi|204 EIHLCKDERGKTGLRLQAVDKGLFVQLVQANTPASLVGLRFGDQILQIDGCDCAGWNTHK 110 120 130 140 150 160 110 120 130 140 150 160 hg0405 AHQVVKKASGDKIVVVVRDRPFQRTVTMHKDSMGHVGFVIKKGKIVSLVKGSSAARNGLL ::.:.::::..:::.:.::::::::::::::: :.::: ::::::::.:::::::::::: gi|204 AHKVLKKASAEKIVMVIRDRPFQRTVTMHKDSSGQVGFSIKKGKIVSVVKGSSAARNGLL 170 180 190 200 210 220 170 180 190 200 210 220 hg0405 TNHYVCEVDGQNVIGLKDKKIMEILATAGNVVTLTIIPSVIYEHMVKKLPPVLLHHTMDH ::::::::.:::::::::::. :::.:::.:.::::::.::::::.:.: :.:::::::: gi|204 TNHYVCEVNGQNVIGLKDKKVTEILTTAGDVITLTIIPTVIYEHMIKRLSPLLLHHTMDH 230 240 250 260 270 280 hg0405 SIPDA :::: gi|204 SIPDT 290 225 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 03:44:58 2008 done: Tue Aug 12 03:47:44 2008 Total Scan time: 667.110 Total Display time: 0.040 Function used was FASTA [version 34.26.5 April 26, 2007]