hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-03474569/chunk_1/iprscan-20080812-03474569.nocrc
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Query sequence: hg04050
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00595.14.fs PDZ domain (Also known as DHR or GLGF)          55.0    8.3e-15   2
PF00595.14.ls PDZ domain (Also known as DHR or GLGF)          58.9    1.6e-14   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00595.14.fs   1/2      41   118 ..     1    86 []    32.6  1.7e-08
PF00595.14.ls   1/2      41   118 ..     1    86 []    34.5  3.4e-07
PF00595.14.fs   2/2     125   197 ..     1    86 []    22.5  1.2e-05
PF00595.14.ls   2/2     125   197 ..     1    86 []    24.4  0.00039

Alignments of top-scoring domains:
PF00595.14.fs: domain 1 of 2, from 41 to 118: score 32.6, E = 1.7e-08
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      e++l k+ +rg+ G++++   d+    g+fv  v+++  +A   G L
     hg04050    41    EIHLCKD-ERGKTGLRLR-KVDQ----GLFVQLVQAN-TPASLVG-L 79   

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   + GDq+l+++G+d +++s  +a ++ k+++g ++ ++v+   
     hg04050    80 RFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVR    118  

PF00595.14.ls: domain 1 of 2, from 41 to 118: score 34.5, E = 3.4e-07
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      e++l k+ +rg+ G++++   d+    g+fv  v+++  +A   G L
     hg04050    41    EIHLCKD-ERGKTGLRLR-KVDQ----GLFVQLVQAN-TPASLVG-L 79   

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                   + GDq+l+++G+d +++s  +a ++ k+++g ++ ++v+   
     hg04050    80 RFGDQLLQIDGRDCAGWSSHKAHQVVKKASGDKIVVVVR    118  

PF00595.14.fs: domain 2 of 2, from 125 to 197: score 22.5, E = 1.2e-05
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      +vt++k+ + g +Gf ik          + + ++++G ++A++ G L
     hg04050   125    TVTMHKD-SMGHVGFVIK---------KGKIVSLVKG-SSAARNG-L 159  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                     ++ + +v+Gq++ +l + +++++l  +g+ +vtLt++   
     hg04050   160 LTNHYVCEVDGQNVIGLKDKKIMEILATAGN-VVTLTII    197  

PF00595.14.ls: domain 2 of 2, from 125 to 197: score 24.4, E = 0.00039
                   *->evtlekedkrgglGfsikggsdkgadkgifvsevlpGsgaAeagGrL
                      +vt++k+ + g +Gf ik          + + ++++G ++A++ G L
     hg04050   125    TVTMHKD-SMGHVGFVIK---------KGKIVSLVKG-SSAARNG-L 159  

                   qaGDqIlsvNGqdlenlsheeavlalkgsggsevtLtvl<-*
                     ++ + +v+Gq++ +l + +++++l  +g+ +vtLt++   
     hg04050   160 LTNHYVCEVDGQNVIGLKDKKIMEILATAGN-VVTLTII    197  

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