hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-03474569/chunk_1/iprscan-20080812-03474569.nocrc
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Query sequence: hg04050
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00228                                                  89.7    3.5e-22   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/2      50   121 ..     1    80 []    49.1  5.7e-10
SM00228    2/2     134   200 ..     1    80 []    40.6  2.2e-07

Alignments of top-scoring domains:
SM00228: domain 1 of 2, from 50 to 121: score 49.1, E = 5.7e-10
                   *->gglGfsivg...gifvssvvpGspAakaGrkslglLkvGDvIleVNG
                      g  G++++  ++g+fv  v++++pA+  G      L+ GD++l+++G
     hg04050    50    GKTGLRLRKvdqGLFVQLVQANTPASLVG------LRFGDQLLQIDG 90   

                   etsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                     +  g++   a ++ kka+g    +k++++v+ ++   
     hg04050    91 -RDCAGWSSHKAHQVVKKASG----DKIVVVVRDRP    121  

SM00228: domain 2 of 2, from 134 to 200: score 40.6, E = 2.2e-07
                   *->gglGfsivggifvssvvpGspAakaGrkslglLkvGDvIleVNGets
                      g  Gf i+    ++s+v+Gs Aa+ G      L  +  + eV+G ++
     hg04050   134    GHVGFVIKK-GKIVSLVKGSSAARNG------LLTNHYVCEVDG-QN 172  

                   vegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   v gl +  ++++l  ag+     +vtLt+++     
     hg04050   173 VIGLKDKKIMEILATAGN-----VVTLTIIPSV    200  

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