hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-03540991/chunk_1/iprscan-20080812-03540991.nocrc
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Query sequence: hg04234
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00060.17.fs Ligand-gated ion channel                       124.3    3.2e-34   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00060.17.fs   1/1     187   300 ..     1   121 [.   124.3  3.2e-34

Alignments of top-scoring domains:
PF00060.17.fs: domain 1 of 1, from 187 to 300: score 124.3, E = 3.2e-34
                   *->slevWlcilaayllvsvvlflverwfsPyewrgnrqprpcneddqsp
                      s +vW+++++++l v ++ ++++++fsP ++++n++ ++       +
     hg04234   187    SPAVWVMMFVMCLTVVAITVFMFEYFSPVSYNQNLTRGK-------K 226  

                   eeepnqftlsnslWFsfgalmq.QGcdelPrslSgRivvgvWwfFaLili
                   +  p  ft++ s+W+ ++  +++ ++ e+Pr++++ i+v vW+fFa+i++
     hg04234   227 SGGP-AFTIGKSVWLLWALVFNnSVPIENPRGTTSKIMVLVWAFFAVIFL 275  

                   sSYTANLAAFLTvermqspIesleD<-*
                   +SYTANLAAF++ e+   ++++l+D   
     hg04234   276 ASYTANLAAFMIQEQYIDTVSGLSD    300  

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