hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-03540991/chunk_1/iprscan-20080812-03540991.nocrc
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Query sequence: hg04234
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00079                                                  58.9    6.5e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00079    1/1      75   270 ..     1   296 []    58.9  6.5e-13

Alignments of top-scoring domains:
SM00079: domain 1 of 1, from 75 to 270: score 58.9, E = 6.5e-13
                   *->tlkVttrilekPfvmfkknpeglkiDPitgnkcfeGyCIDLlealak
                      t+  ++    +P++ +                c++G+CID+l++la 
     hg04234    75    TFSSGD---VAPYTKL----------------CCKGFCIDILKKLAR 102  

                   ilgFtYelelVpDGkYGskdantgnWnGmIgeLirgeADmAVapLTItae
                    ++F+Y+l+lV+ Gk+G+++++   WnGmIge+++++ADmA+++LTI+ e
     hg04234   103 VVKFSYDLYLVTNGKHGKRVRG--VWNGMIGEVYYKRADMAIGSLTINEE 150  

                   RervVDFTkPFmelGIsILvkkpdkqksslfsFLePfskkLAAfLTverm
                   R+++VDF++PF e+GIs++v + ++ + s+ +FLeP+s           +
     hg04234   151 RSEIVDFSVPFVETGISVMVARSNG-TVSPSAFLEPYSPA--------VW 191  

                   espIssveDLakrnpQtkieyGTvrgssTeefFkrpSkiptysrmwryMs
                   ++ +                + Tv    +++f              +y  
     hg04234   192 VMMFVM--------------CLTVVAITVFMF--------------EYF- 212  

                   srskspsvfvkslseGvqrvlnskGnYAFlmEstyleYeasrDpnCdYKL
                       sp  + ++l +G    +++  + AF    ++  ++a      +   
     hg04234   213 ----SPVSYNQNLTRG---KKSG--GPAFTIGKSVWLLWALV--FNN--S 249  

                   vtvGevfgskGYGIAlpkgSPlrdklSrAILkLsEsGeLekLknKWwkk<
                   v ++++ g++                             +++   W +  
     hg04234   250 VPIENPRGTTS----------------------------KIMVLVWAFF  270  

                   -*
                     
     hg04234     -    -    

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