hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-04011212/chunk_1/iprscan-20080812-04011212.nocrc
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Query sequence: hg04246
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     26.0    1.5e-06   2
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     20.8     0.0016   1
PF00096.16.ls Zinc finger, C2H2 type                          20.3     0.0063   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/2     750   811 ..     1    74 []    19.0  0.00014
PF00076.12.ls   1/1     750   811 ..     1    74 []    20.8   0.0016

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 2, from 750 to 811: score 19.0, E = 0.00014
                   *->lfVgNLppd.tteedLkdlFskfGpiesikivrDttretgrskGfaF
                      l ++ Lp+d++teed+++lF++fG++ ++ iv+         +  a+
     hg04246   750    LLITELPEDgCTEEDVRKLFQPFGKVNDVLIVPY--------RKEAY 788  

                   VeFedeedAekAldalnGkelggrelrv<-*
                    e+e +e+ ++ ++     +++  +l++   
     hg04246   789 LEMEFKEAITAIMK-----YIETTPLTI    811  

PF00076.12.ls: domain 1 of 1, from 750 to 811: score 20.8, E = 0.0016
                   *->lfVgNLppd.tteedLkdlFskfGpiesikivrDttretgrskGfaF
                      l ++ Lp+d++teed+++lF++fG++ ++ iv+         +  a+
     hg04246   750    LLITELPEDgCTEEDVRKLFQPFGKVNDVLIVPY--------RKEAY 788  

                   VeFedeedAekAldalnGkelggrelrv<-*
                    e+e +e+ ++ ++     +++  +l++   
     hg04246   789 LEMEFKEAITAIMK-----YIETTPLTI    811  

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