hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-04011212/chunk_1/iprscan-20080812-04011212.nocrc
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Query sequence: hg04246
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00360                                                  47.5    1.7e-09   2
SM00451                                                  46.2    4.5e-09   2
SM00355                                                  28.8    0.00076   2

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00451      1/2     495   529 ..     1    37 []     4.4      9.5
SM00355      1/2     498   522 ..     1    23 []    11.5       16
SM00360      1/2     749   819 ..     1   121 []    36.9  2.7e-06
SM00360      2/2     978  1047 ..     1   121 []    10.6     0.35
SM00451      2/2    1997  2031 ..     1    37 []    41.7  9.5e-08
SM00355      2/2    2000  2024 ..     1    23 []    17.3      2.2

Alignments of top-scoring domains:
SM00451: domain 1 of 2, from 495 to 529: score 4.4, E = 9.5
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                      + ++ C+lCnv ++   +++  +H ++  H + ++++   
     hg04246   495    IFPHLCSLCNVECS-HLKDW-IQHQNTSTHIESCRQL    529  

SM00355: domain 1 of 2, from 498 to 522: score 11.5, E = 16
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      + C++ C+  +s+ ++ ++H+ +++H   
     hg04246   498    HLCSL-CNVECSHLkDWIQHQNtsTH    522  

SM00360: domain 1 of 2, from 749 to 819: score 36.9, E = 2.7e-06
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +l +  L + + +teed+r+lF              ++fGkv +v i
     hg04246   749    VLLITEL-PEDGCTEEDVRKLF--------------QPFGKVNDVLI 780  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   v+ ++                            a+ e+e +e+  +   +
     hg04246   781 VPYRK---------------------------EAYLEMEFKEAITAI--M 801  

                   ealnaskGkeledgGrptlglrVe<-*
                   +    ++  ++  +G+    +++    
     hg04246   802 KYIE-TTPLTI--KGKS---VKIC    819  

SM00360: domain 2 of 2, from 978 to 1047: score 10.6, E = 0.35
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +  V+NL +++  + e++++l               ++fG ++++ i
     hg04246   978    VMLVSNL-PNKGYSVEEVYDLA--------------KPFGGLKDILI 1009 

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAll.
                   +   +                            a++e  ++ +Ae  ++ 
     hg04246  1010 LSSHK---------------------------KAYIE-INRKAAESMVKf 1031 

                   iealnaskGkeledgGrptlglrVe<-*
                     ++       +  +G++   l ++   
     hg04246  1032 YTCFP----VLM--DGNQ---LSIS    1047 

SM00451: domain 2 of 2, from 1997 to 2031: score 41.7, E = 9.5e-08
                   *->tggfyCklCnvtfkddeisvreaHlkGkkHkknvkky<-*
                      + gf+C++C+++++ +e+++  +H+k+ +Hk+n +k+   
     hg04246  1997    KAGFFCPICSLFYS-GEKAM-TNHCKSTRHKQNTEKF    2031 

SM00355: domain 2 of 2, from 2000 to 2024: score 17.3, E = 2.2
                   *->ykCpigCgksfssk.aLkrHmr..vH<-*
                      + Cpi C+  +s ++a+++H ++++H   
     hg04246  2000    FFCPI-CSLFYSGEkAMTNHCKstRH    2024 

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