hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-04074487/chunk_1/iprscan-20080812-04074487.nocrc
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Query sequence: hg04315
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00432.11.fs Prenyltransferase and squalene oxidase re   267.9    1.9e-77   5
PF00432.11.ls Prenyltransferase and squalene oxidase re   260.1    4.2e-75   5

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00432.11.fs   1/5      66   109 ..     1    45 []    52.7  1.5e-14
PF00432.11.ls   1/5      66   109 ..     1    45 []    54.7  2.9e-13
PF00432.11.ls   2/5     114   157 ..     1    45 []    66.1  1.1e-16
PF00432.11.fs   2/5     114   157 ..     1    45 []    64.1  7.3e-18
PF00432.11.fs   3/5     162   205 ..     1    45 []    64.1  7.1e-18
PF00432.11.ls   3/5     162   205 ..     1    45 []    66.1  1.1e-16
PF00432.11.fs   4/5     210   253 ..     1    45 []    56.3  1.3e-15
PF00432.11.ls   4/5     210   253 ..     1    45 []    58.3  2.3e-14
PF00432.11.fs   5/5     258   290 ..     1    33 [.    30.7  4.3e-08

Alignments of top-scoring domains:
PF00432.11.fs: domain 1 of 5, from 66 to 109: score 52.7, E = 1.5e-14
                   *->idkeklvdyllscQnpdGGfggrpggcesdtyytycalaaLallg<-
                      +++e+++ +++scQ++ GG + ++g+ ++++ yt+ a+++L l++  
     hg04315    66    MNREEILAFIKSCQHECGGISASIGH-DPHLLYTLSAVQILTLYD   109  

                   *
                    
     hg04315     -   -    

PF00432.11.ls: domain 1 of 5, from 66 to 109: score 54.7, E = 2.9e-13
                   *->idkeklvdyllscQnpdGGfggrpggcesdtyytycalaaLallg<-
                      +++e+++ +++scQ++ GG + ++g+ ++++ yt+ a+++L l++  
     hg04315    66    MNREEILAFIKSCQHECGGISASIGH-DPHLLYTLSAVQILTLYD   109  

                   *
                    
     hg04315     -   -    

PF00432.11.ls: domain 2 of 5, from 114 to 157: score 66.1, E = 1.1e-16
                   *->idkeklvdyllscQnpdGGfggrpggcesdtyytycalaaLallg<-
                      id++k+v+y+++ Q +dG+f+g+++g e dt++++ca+a+Lallg  
     hg04315   114    IDVNKVVEYVKGLQKEDGSFAGDIWG-EIDTRFSFCAVATLALLG   157  

                   *
                    
     hg04315     -   -    

PF00432.11.fs: domain 2 of 5, from 114 to 157: score 64.1, E = 7.3e-18
                   *->idkeklvdyllscQnpdGGfggrpggcesdtyytycalaaLallg<-
                      id++k+v+y+++ Q +dG+f+g+++g e dt++++ca+a+Lallg  
     hg04315   114    IDVNKVVEYVKGLQKEDGSFAGDIWG-EIDTRFSFCAVATLALLG   157  

                   *
                    
     hg04315     -   -    

PF00432.11.fs: domain 3 of 5, from 162 to 205: score 64.1, E = 7.1e-18
                   *->idkeklvdyllscQnpdGGfggrpggcesdtyytycalaaLallg<-
                      i++ek+++++lsc+n+dGGfg+rpg+ es++++ yc+++ La++   
     hg04315   162    INVEKAIEFVLSCMNFDGGFGCRPGS-ESHAGQIYCCTGFLAITS   205  

                   *
                    
     hg04315     -   -    

PF00432.11.ls: domain 3 of 5, from 162 to 205: score 66.1, E = 1.1e-16
                   *->idkeklvdyllscQnpdGGfggrpggcesdtyytycalaaLallg<-
                      i++ek+++++lsc+n+dGGfg+rpg+ es++++ yc+++ La++   
     hg04315   162    INVEKAIEFVLSCMNFDGGFGCRPGS-ESHAGQIYCCTGFLAITS   205  

                   *
                    
     hg04315     -   -    

PF00432.11.fs: domain 4 of 5, from 210 to 253: score 56.3, E = 1.3e-15
                   *->idkeklvdyllscQnpdGGfggrpggcesdtyytycalaaLallg<-
                       + + l ++l+ +Q+p+GG++grp++  +d++y++++la+L+++g  
     hg04315   210    VNSDLLGWWLCERQLPSGGLNGRPEK-LPDVCYSWWVLASLKIIG   253  

                   *
                    
     hg04315     -   -    

PF00432.11.ls: domain 4 of 5, from 210 to 253: score 58.3, E = 2.3e-14
                   *->idkeklvdyllscQnpdGGfggrpggcesdtyytycalaaLallg<-
                       + + l ++l+ +Q+p+GG++grp++  +d++y++++la+L+++g  
     hg04315   210    VNSDLLGWWLCERQLPSGGLNGRPEK-LPDVCYSWWVLASLKIIG   253  

                   *
                    
     hg04315     -   -    

PF00432.11.fs: domain 5 of 5, from 258 to 290: score 30.7, E = 4.3e-08
                   *->idkeklvdyllscQn.pdGGfggrpggcesdtyy<-*
                      id+ekl++++l cQ+++ GGf++rpg+ + + y+   
     hg04315   258    IDREKLRNFILACQDeETGGFADRPGD-MHFIYQ    290  

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