hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-04135397/chunk_1/iprscan-20080812-04135397.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hg04377
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00147                                                 356.5   1.7e-102   1
SM00229                                                 146.1    3.8e-39   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00229     1/1     904  1046 ..     1   172 []   146.1  3.8e-39
SM00147     1/1    1053  1282 ..     1   261 []   356.5 1.7e-102

Alignments of top-scoring domains:
SM00229: domain 1 of 1, from 904 to 1046: score 146.1, E = 3.8e-39
                   *->ckggliKgGtlekLiehLteardkgkvdlkaDptfvetFLlTYRsFi
                      ++g+ ++gG+ + L++h+te++       k+   ++e+FL+TYR+Fi
     hg04377   904    DDGPDVRGGSGDILLVHATETDR------KDLVLYCEAFLTTYRTFI 944  

                   ttqeLlqkLldrYnaippeivsrSlelkateaseglsfedy.sknaipvg
                   +++eL+ kL++rY++++p                +++f+++ skn     
     hg04377   945 SPEELIKKLQYRYEKFSPF---------------ADTFKKRvSKN----- 974  

                   faetdiivkekvnprriqnrVlnilrlWvenywe.dFeedpklnlfLeel
                      t+++++++v+++++   + +il+l++e+++  ++ ++++l++ L+++
     hg04377   975 ---TFFVLVRVVDELCLVELTEEILKLLMELVFRlVCNGELSLARVLRKN 1021 

                   flelvedkkdkgpglekslanilerls<-*
                   +l++v++k  k+ ++++s++ +++r++   
     hg04377  1022 ILDKVDQK--KLLRCATSSQPLAARGV    1046 

SM00147: domain 1 of 1, from 1053 to 1282: score 356.5, E = 1.7e-102
                   *->lllldpeelAeQLTlldfelFrkIepsEllgsvwgkrskkspsplap
                      l++++++e+AeQLTlld+elF+kIe++E l + + + ++ksp     
     hg04377  1053    LHDFHSHEIAEQLTLLDAELFYKIEIPEVLLWAKEQNEEKSP----- 1094 

                   qnleafierfNevsnwVateIlkqttlkpkkRaevlskFIkVAkhcreLn
                    nl++f+e+fN++s+wV + I++q++  +++R ++l kFIk++kh+r+Ln
     hg04377  1095 -NLTQFTEHFNNMSYWVRSIIMLQEK--AQDRERLLLKFIKIMKHLRKLN 1141 

                   NFnSlmAIvsaLssspIsRLkkTWeklsskykklfeeLeelldpserNfk
                   NFnS++AI+saL+s+pI+RL++ ++  +      + e++ l d+s   f+
     hg04377  1142 NFNSYLAILSALDSAPIRRLEWQKQTSE-----GLAEYCTLIDSS-SSFR 1185 

                   nYReaLkscnkspnvqppcvPflGvyLkDLtfidegnpdflengtkglvN
                   +YR+aL++++      ppc+P+lG++L+DLtf++ gnpd+++    g+vN
     hg04377  1186 AYRAALSEVE------PPCIPYLGLILQDLTFVHLGNPDYID----GKVN 1225 

                   FeKrrkiakilreirqlqsacqpynlkpnrndiqellrasrplevlpeee
                   F+Kr++ ++il+++r++q+  ++y++++n +di+++++ +  +++l ee 
     hg04377  1226 FSKRWQQFNILDSMRCFQQ--AHYDMRRN-DDIINFFNDF--SDHLAEE- 1269 

                   delyelSlriEPrv<-*
                     l+elSl+i Pr+   
     hg04377  1270 -ALWELSLKIKPRN    1282 

//