hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-04372810/chunk_1/iprscan-20080812-04372810.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh00016y3 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03028.6.fs Dynein heavy chain 1338.9 0 2 PF03028.6.ls Dynein heavy chain 1256.8 0 1 PF08393.3.fs Dynein heavy chain, N-terminal region 2 689.3 5.5e-205 1 PF08393.3.ls Dynein heavy chain, N-terminal region 2 691.3 6.8e-205 1 PF08385.2.fs Dynein heavy chain, N-terminal region 1 73.2 3.2e-21 1 PF07728.4.fs ATPase family associated with various ce 73.1 4.3e-21 6 PF07728.4.ls ATPase family associated with various ce 59.7 9e-15 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF08385.2.fs 1/1 1 86 [. 531 619 .] 73.2 3.2e-21 PF08393.3.fs 1/1 585 998 .. 1 427 [] 689.3 5.5e-205 PF08393.3.ls 1/1 585 998 .. 1 427 [] 691.3 6.8e-205 PF07728.4.ls 1/2 1441 1585 .. 1 184 [] 57.6 3.8e-14 PF07728.4.fs 4/6 1441 1585 .. 1 184 [] 55.9 4.6e-16 PF03028.6.ls 1/1 3077 3704 .. 1 783 [] 1256.8 0 PF03028.6.fs 1/2 3077 3255 .. 1 198 [. 351.6 3.1e-106 PF03028.6.fs 2/2 3256 3704 .. 280 783 .] 987.3 1.4e-297 Alignments of top-scoring domains: PF08385.2.fs: domain 1 of 1, from 1 to 86: score 73.2, E = 3.2e-21 *->EvryLlllegfrvPssalelakkaeklypyavsLkelvrtYnkilsq E+ yL+ e P++a+ +++ ++ +++ + +L++++++Ynk+ ++ hh00016y3 1 EMSYLEPREMKHMPETAAAMFSSRDFYRQLVANLELMANWYNKVMKT 47 lsetverkipLlapelqdidellkpGltkLtWeslnieeyie<-* l+e ve+ pL+++elq+id +l+ ++++L+W++++i +y+ hh00016y3 48 LLE-VEF--PLVEEELQNIDLRLRAAEETLNWKTEGICDYVT 86 PF08393.3.fs: domain 1 of 1, from 585 to 998: score 689.3, E = 5.5e-205 *->peLkqleeElkllkqlWdlysevwesidewketpWsdlRdpekleee ++L+q+++E+ lk lWd++ +v +si +w++tpW+ + ++e++e e hh00016y3 585 KQLRQCRKEVCQLKELWDTIGMVTSSIHAWETTPWRNI-NVEAMELE 630 ldkllkqlrkLpkevrqyeakeafeklkqkiknfkkslpllqeLknpamk ++++ + +r+L+kevr ++ af l++++ n ++sl+++ eL+npa++ hh00016y3 631 CKQFARHIRNLDKEVRAWD---AFTGLESTVWNTLSSLRAVAELQNPAIR 677 eRHWeqLmqilgvkdfdkknkldsesltLgdlldlnLilkyeeeikdIvd eRHW+qLmq++gv+ f ++++++tL++ll+l+L ++ye+e++ Ivd hh00016y3 678 ERHWRQLMQATGVS-F-----TMDQDTTLAHLLQLQL-HHYEDEVRGIVD 720 qAqkElaiEkaLkeiketWsnveFelvpYkdtgrckllkGgwdelfekLe +A kE+ +Ek Lke+ +tW+++eF+++p+ +t ++ll + ++l+e Le hh00016y3 721 KAAKEMGMEKTLKELQTTWAGMEFQYEPHPRTN-VPLLC-SDEDLIEVLE 768 DnqvlLqsMkaSpyykpFedeiseWekKLslldeileiWleVQrkWvYLE Dnqv+Lq++ +S+y+++F++e+s+W+kKLs++d+++ iW+eVQr+W +LE hh00016y3 769 DNQVQLQNLVMSKYVAFFLEEVSGWQKKLSTVDAVISIWFEVQRTWTHLE 818 gIFigSeDIrkQLPeEakRFdnIDkeflkiMkkvakdpnVldvcnipgll +IF gSeDIr+QLP+++kRF++ID +f+++ +++k pnV++ +n pgl+ hh00016y3 819 SIFTGSEDIRAQLPQDSKRFEGIDIDFKELAYDAQKIPNVVQTTNKPGLY 868 eslLerlneqLekcQKaLneYLEtKRlaFPRFYFlSDdDLLEILGnskdP e+ Le+++ +L +c+KaL eYL+tKRlaFPRFYFlS+ DLL+IL+n++ P hh00016y3 869 EK-LEDIQGRLCLCEKALAEYLDTKRLAFPRFYFLSSSDLLDILSNGTAP 917 trvQkHLkKlFdgIasLefdedgkd...ktIvgmvSkEGEeVpfsnpvsi ++vQ+HL KlFd++a+ +f+ d +++++kt +gm+SkE E+V+fs+p+++ hh00016y3 918 QQVQRHLSKLFDNMAKMRFQLDASGeptKTSLGMYSKEEEYVAFSEPCDC 967 egappVEeWLneLedeMkaTLkellreaveayr<-* +g +VE+WLn++ +MkaT+++ + e+v+ay+ hh00016y3 968 SG--QVEIWLNHVLGHMKATVRHEMTEGVTAYE 998 PF08393.3.ls: domain 1 of 1, from 585 to 998: score 691.3, E = 6.8e-205 *->peLkqleeElkllkqlWdlysevwesidewketpWsdlRdpekleee ++L+q+++E+ lk lWd++ +v +si +w++tpW+ + ++e++e e hh00016y3 585 KQLRQCRKEVCQLKELWDTIGMVTSSIHAWETTPWRNI-NVEAMELE 630 ldkllkqlrkLpkevrqyeakeafeklkqkiknfkkslpllqeLknpamk ++++ + +r+L+kevr ++ af l++++ n ++sl+++ eL+npa++ hh00016y3 631 CKQFARHIRNLDKEVRAWD---AFTGLESTVWNTLSSLRAVAELQNPAIR 677 eRHWeqLmqilgvkdfdkknkldsesltLgdlldlnLilkyeeeikdIvd eRHW+qLmq++gv+ f ++++++tL++ll+l+L ++ye+e++ Ivd hh00016y3 678 ERHWRQLMQATGVS-F-----TMDQDTTLAHLLQLQL-HHYEDEVRGIVD 720 qAqkElaiEkaLkeiketWsnveFelvpYkdtgrckllkGgwdelfekLe +A kE+ +Ek Lke+ +tW+++eF+++p+ +t ++ll + ++l+e Le hh00016y3 721 KAAKEMGMEKTLKELQTTWAGMEFQYEPHPRTN-VPLLC-SDEDLIEVLE 768 DnqvlLqsMkaSpyykpFedeiseWekKLslldeileiWleVQrkWvYLE Dnqv+Lq++ +S+y+++F++e+s+W+kKLs++d+++ iW+eVQr+W +LE hh00016y3 769 DNQVQLQNLVMSKYVAFFLEEVSGWQKKLSTVDAVISIWFEVQRTWTHLE 818 gIFigSeDIrkQLPeEakRFdnIDkeflkiMkkvakdpnVldvcnipgll +IF gSeDIr+QLP+++kRF++ID +f+++ +++k pnV++ +n pgl+ hh00016y3 819 SIFTGSEDIRAQLPQDSKRFEGIDIDFKELAYDAQKIPNVVQTTNKPGLY 868 eslLerlneqLekcQKaLneYLEtKRlaFPRFYFlSDdDLLEILGnskdP e+ Le+++ +L +c+KaL eYL+tKRlaFPRFYFlS+ DLL+IL+n++ P hh00016y3 869 EK-LEDIQGRLCLCEKALAEYLDTKRLAFPRFYFLSSSDLLDILSNGTAP 917 trvQkHLkKlFdgIasLefdedgkd...ktIvgmvSkEGEeVpfsnpvsi ++vQ+HL KlFd++a+ +f+ d +++++kt +gm+SkE E+V+fs+p+++ hh00016y3 918 QQVQRHLSKLFDNMAKMRFQLDASGeptKTSLGMYSKEEEYVAFSEPCDC 967 egappVEeWLneLedeMkaTLkellreaveayr<-* +g +VE+WLn++ +MkaT+++ + e+v+ay+ hh00016y3 968 SG--QVEIWLNHVLGHMKATVRHEMTEGVTAYE 998 PF07728.4.ls: domain 1 of 2, from 1441 to 1585: score 57.6, E = 3.8e-14 *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg +v+ vG GtGKs++ + l + ++ +++rp+++ ++++ t ++L+g hh00016y3 1441 SVFVVGGAGTGKSQVLRSLHKTYQIMKRRPVWTDLNPKAVTNDELFG 1487 rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinras +++ + t +w dg + +r + + ++ ++i+++++i+ hh00016y3 1488 IIN-------PATGEWKDGLFSSIMR-ELANTTHDGPKWILLDGDID--- 1526 pevlnaLlslLderrlllpdggelvkvapydklaergreeldlwklgrli p ++++L++++d+++ l+ +e+++ +p+ hh00016y3 1527 PMWIESLNTVMDDNKVLTLASNERIPLNPTM------------------- 1557 hdfrliataNpldgprglnelsaALrrRFlfvtvdpp<-* l+ ++ + + +A+++R + ++ p hh00016y3 1558 --KLLFEISHLRT-------ATPATVSRAGILYINPA 1585 PF07728.4.fs: domain 4 of 6, from 1441 to 1585: score 55.9, E = 4.6e-16 *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg +v+ vG GtGKs++ + l + ++ +++rp+++ ++++ t ++L+g hh00016y3 1441 SVFVVGGAGTGKSQVLRSLHKTYQIMKRRPVWTDLNPKAVTNDELFG 1487 rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinras +++ + t +w dg + +r + + ++ ++i+++++i+ hh00016y3 1488 IIN-------PATGEWKDGLFSSIMR-ELANTTHDGPKWILLDGDID--- 1526 pevlnaLlslLderrlllpdggelvkvapydklaergreeldlwklgrli p ++++L++++d+++ l+ +e+++ +p+ hh00016y3 1527 PMWIESLNTVMDDNKVLTLASNERIPLNPTM------------------- 1557 hdfrliataNpldgprglnelsaALrrRFlfvtvdpp<-* l+ ++ + + +A+++R + ++ p hh00016y3 1558 --KLLFEISHLRT-------ATPATVSRAGILYINPA 1585 PF03028.6.ls: domain 1 of 1, from 3077 to 3704: score 1256.8, E = 0 *->lentypnpkvdwlsdqqWdsiarLseleeFrgLdddleknapdkrWk ++++ ++p+ +ls+q+W++++ Ls +eeF++Ld+d+e++a k Wk hh00016y3 3077 VQTGTASPV-EFLSHQAWGAVKVLSSMEEFSNLDRDIEGSA--KSWK 3120 kwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRlty k+++se+P E+eklP+eWk +k+a+q+L++lRa+RPDR+ty hh00016y3 3121 KFVESECP-EKEKLPQEWK----------NKTALQRLCMLRAMRPDRMTY 3159 alrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDPsk alr+FveekL G+k+v + ++ld++ ++e eS p tP++FiLSPG+DP+k hh00016y3 3160 ALRDFVEEKL-GSKYVVG-RALDFATSFE-ESGPATPMFFILSPGVDPLK 3206 dvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVlLQ dve ++k+G+tf+n++ +h++SLGQGQ++ +Ae+a++ Aak+GhWV+LQ hh00016y3 3207 DVESQGRKLGYTFNNQN-FHNVSLGQGQEV-VAEAALDLAAKKGHWVILQ 3254 NiHLaasWLptLEKkLesltppegtHpdFRLFLTaEpaprPeehIfPigl N + hh00016y3 3255 N--------------------------------------T---------- 3256 LqnSiKiTNEPPtGlKANLlraysnDPIfdqeflemckkpaefkrllFlL lemc++++efk++lF+L hh00016y3 3257 ---------------------------------LEMCSRETEFKSILFAL 3273 CfFHAVVqERRkFGPlGWNksYEFNesDLriSvdvldnyLeanakGRqNi C+FHAVV+ERRkFGP+GWN+sY+FN++DL+iSv+vl+n+Lean hh00016y3 3274 CYFHAVVAERRKFGPQGWNRSYPFNTGDLTISVNVLYNFLEAN------- 3316 dpdkvPWeaLRYlfGeimYGGrItDdwDrRLLrtyLeefftpelfdgnad kvP+++LRYlfGeimYGG+ItDdwDrRL+rtyL ef++pe+++g + hh00016y3 3317 --AKVPYDDLRYLFGEIMYGGHITDDWDRRLCRTYLGEFIRPEMLEG--E 3362 yeLapkidgdlgfavPpntdyeeYieyIeesLPsessPelfGLhpNAEIg ++Lap gf++P+n+dy +Y++yI+++LP+es P+l+GLhpNAEIg hh00016y3 3363 LSLAP------GFPLPGNMDYNGYHQYIDAELPPES-PYLYGLHPNAEIG 3405 fltqeteklirtllelQpreaggeldggsgekvsrkkdssEEvvkqvlrd fltq++ekl+rt+lelQpr++++ g+g ++r EE+vk++l++ hh00016y3 3406 FLTQTSEKLFRTVLELQPRDSQA--RDGAG--ATR-----EEKVKALLEE 3446 ileklpkklCqklFdkeelmlkrteeikdPlfvVlvQEiermNkLlkeir ile+++ ++F+++elm+k+ e+++P++vV++QE+ rmN+L++ei hh00016y3 3447 ILERVT-----DEFNIPELMAKV--EERTPYIVVAFQECGRMNILTREIQ 3489 rSLkeLdlglkGeltmsndlEeliksLlngrVPaWDmWakksyPslkpLg rSL+eL lglkGeltm++++E+l ++L++++VP+ +Wa+++yPs+ +L+ hh00016y3 3490 RSLRELELGLKGELTMTSHMENLQNALYFDMVPE--SWARRAYPSTAGLA 3537 sWvtDLlkRirQLqeWtedsGGAklglPkvvWLsGFFnPQsFLTAimQsv +W+ DLl Ri++L+ Wt d ++ P++vWL+GFFnPQsFLTAimQs+ hh00016y3 3538 AWFPDLLNRIKELEAWTGD-----FTMPSTVWLTGFFNPQSFLTAIMQST 3582 ARknkwPLDkLcLdteVtkkekeeqdskepPedGvyVhGLfLEGArWDsk ARkn+wPLD+++L++++tkk++ee+ s pP++G+y+hGLf+EGA+WD++ hh00016y3 3583 ARKNEWPLDQMALQCDMTKKNREEFRS--PPREGAYIHGLFMEGACWDTQ 3630 tgllaeskpKeLfspmPViwlkavpasdkqetkdvyecPVYktkaRggvL +g+++e+k+K L++pmPV+++ka+pa dkq++++vy+cPVYkt++Rg+ hh00016y3 3631 AGIITEAKLKDLTPPMPVMFIKAIPA-DKQDCRSVYSCPVYKTSQRGP-- 3677 STTGHStnyvftfnLktkedtpaskWilaGVALllq<-* +yv+tfnLktke ++skW+laGVALllq hh00016y3 3678 -------TYVWTFNLKTKE--NPSKWVLAGVALLLQ 3704 PF03028.6.fs: domain 1 of 2, from 3077 to 3255: score 351.6, E = 3.1e-106 *->lentypnpkvdwlsdqqWdsiarLseleeFrgLdddleknapdkrWk ++++ ++p+ +ls+q+W++++ Ls +eeF++Ld+d+e++a k Wk hh00016y3 3077 VQTGTASPV-EFLSHQAWGAVKVLSSMEEFSNLDRDIEGSA--KSWK 3120 kwydseqPgEeeklPkeWkdeqklsidslkksaFqKLlllRalRPDRlty k+++se+P E+eklP+eWk +k+a+q+L++lRa+RPDR+ty hh00016y3 3121 KFVESECP-EKEKLPQEWK----------NKTALQRLCMLRAMRPDRMTY 3159 alrnFveekLpGekfvepdppldlskiyekeSspstPilFiLSPGaDPsk alr+FveekL G+k+v + ++ld++ ++e eS p tP++FiLSPG+DP+k hh00016y3 3160 ALRDFVEEKL-GSKYVVG-RALDFATSFE-ESGPATPMFFILSPGVDPLK 3206 dvekLAkkmGFtfdnGkklhSiSLGQGQgpniAekaIetAaksGhWVlLQ dve ++k+G+tf+n++ +h++SLGQGQ++ +Ae+a++ Aak+GhWV+LQ hh00016y3 3207 DVESQGRKLGYTFNNQN-FHNVSLGQGQEV-VAEAALDLAAKKGHWVILQ 3254 N<-* N hh00016y3 3255 N 3255 PF03028.6.fs: domain 2 of 2, from 3256 to 3704: score 987.3, E = 1.4e-297 *->flemckkpaefkrllFlLCfFHAVVqERRkFGPlGWNksYEFNesDL +lemc++++efk++lF+LC+FHAVV+ERRkFGP+GWN+sY+FN++DL hh00016y3 3256 TLEMCSRETEFKSILFALCYFHAVVAERRKFGPQGWNRSYPFNTGDL 3302 riSvdvldnyLeanakGRqNidpdkvPWeaLRYlfGeimYGGrItDdwDr +iSv+vl+n+Lean kvP+++LRYlfGeimYGG+ItDdwDr hh00016y3 3303 TISVNVLYNFLEAN---------AKVPYDDLRYLFGEIMYGGHITDDWDR 3343 RLLrtyLeefftpelfdgnadyeLapkidgdlgfavPpntdyeeYieyIe RL+rtyL ef++pe+++g +++Lap gf++P+n+dy +Y++yI+ hh00016y3 3344 RLCRTYLGEFIRPEMLEG--ELSLAP------GFPLPGNMDYNGYHQYID 3385 esLPsessPelfGLhpNAEIgfltqeteklirtllelQpreaggeldggs ++LP+es P+l+GLhpNAEIgfltq++ekl+rt+lelQpr++++ g+ hh00016y3 3386 AELPPES-PYLYGLHPNAEIGFLTQTSEKLFRTVLELQPRDSQA--RDGA 3432 gekvsrkkdssEEvvkqvlrdileklpkklCqklFdkeelmlkrteeikd g ++r EE+vk++l++ile+++ ++F+++elm+k+ e+++ hh00016y3 3433 G--ATR-----EEKVKALLEEILERVT-----DEFNIPELMAKV--EERT 3468 PlfvVlvQEiermNkLlkeirrSLkeLdlglkGeltmsndlEeliksLln P++vV++QE+ rmN+L++ei rSL+eL lglkGeltm++++E+l ++L++ hh00016y3 3469 PYIVVAFQECGRMNILTREIQRSLRELELGLKGELTMTSHMENLQNALYF 3518 grVPaWDmWakksyPslkpLgsWvtDLlkRirQLqeWtedsGGAklglPk ++VP+ +Wa+++yPs+ +L++W+ DLl Ri++L+ Wt d ++ P+ hh00016y3 3519 DMVPE--SWARRAYPSTAGLAAWFPDLLNRIKELEAWTGD-----FTMPS 3561 vvWLsGFFnPQsFLTAimQsvARknkwPLDkLcLdteVtkkekeeqdske +vWL+GFFnPQsFLTAimQs+ARkn+wPLD+++L++++tkk++ee+ s hh00016y3 3562 TVWLTGFFNPQSFLTAIMQSTARKNEWPLDQMALQCDMTKKNREEFRS-- 3609 pPedGvyVhGLfLEGArWDsktgllaeskpKeLfspmPViwlkavpasdk pP++G+y+hGLf+EGA+WD+++g+++e+k+K L++pmPV+++ka+pa dk hh00016y3 3610 PPREGAYIHGLFMEGACWDTQAGIITEAKLKDLTPPMPVMFIKAIPA-DK 3658 qetkdvyecPVYktkaRggvLSTTGHStnyvftfnLktkedtpaskWila q++++vy+cPVYkt++Rg+ +yv+tfnLktke ++skW+la hh00016y3 3659 QDCRSVYSCPVYKTSQRGP---------TYVWTFNLKTKE--NPSKWVLA 3697 GVALllq<-* GVALllq hh00016y3 3698 GVALLLQ 3704 //