hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-04452621/chunk_1/iprscan-20080812-04452621.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh00096 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00053.14.ls Laminin EGF-like (Domains III and V) 829.9 1.3e-246 13 PF00053.14.fs Laminin EGF-like (Domains III and V) 813.2 1.3e-241 13 PF00055.8.fs Laminin N-terminal (Domain VI) 575.5 1e-174 1 PF00055.8.ls Laminin N-terminal (Domain VI) 577.4 1.2e-170 1 PF07974.3.fs EGF-like domain 48.4 1.6e-12 9 PF00008.17.fs EGF-like domain 41.7 8.4e-11 8 PF07974.3.ls EGF-like domain 26.0 0.00012 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00055.8.fs 1/1 60 294 .. 1 264 [] 575.5 1e-174 PF00055.8.ls 1/1 60 294 .. 1 264 [] 577.4 1.2e-170 PF00053.14.fs 1/13 296 357 .. 1 59 [] 36.2 7.8e-10 PF00053.14.ls 1/13 296 357 .. 1 59 [] 38.1 2.8e-08 PF00053.14.ls 2/13 360 420 .. 1 59 [] 76.6 7.3e-20 PF00053.14.fs 2/13 360 420 .. 1 59 [] 74.7 5.5e-21 PF00053.14.fs 3/13 423 480 .. 1 59 [] 81.2 7e-23 PF00053.14.ls 3/13 423 480 .. 1 59 [] 83.2 7.7e-22 PF00053.14.ls 4/13 483 532 .. 1 59 [] 69.5 9.7e-18 PF00053.14.fs 4/13 483 532 .. 1 59 [] 67.7 5.7e-19 PF00053.14.fs 5/13 535 573 .. 1 48 [. 39.8 7e-11 PF00053.14.ls 5/13 535 579 .. 1 59 [] 34.4 3.7e-07 PF00053.14.ls 6/13 798 843 .. 1 59 [] 78.6 1.8e-20 PF00053.14.fs 6/13 798 843 .. 1 59 [] 76.8 1.3e-21 PF00053.14.ls 7/13 846 889 .. 1 59 [] 70.4 5.2e-18 PF00053.14.fs 7/13 846 889 .. 1 59 [] 68.7 2.9e-19 PF00053.14.fs 8/13 892 939 .. 1 59 [] 72.0 3.4e-20 PF00053.14.ls 8/13 892 939 .. 1 59 [] 73.8 5.1e-19 PF00053.14.ls 9/13 942 998 .. 1 59 [] 43.2 8.5e-10 PF00053.14.fs 9/13 942 998 .. 1 59 [] 41.2 2.7e-11 PF00053.14.fs 10/13 1001 1050 .. 1 59 [] 63.2 1.2e-17 PF00053.14.ls 10/13 1001 1050 .. 1 59 [] 65.0 2.3e-16 PF00053.14.fs 11/13 1053 1106 .. 1 59 [] 71.4 5e-20 PF00053.14.ls 11/13 1053 1106 .. 1 59 [] 73.3 7.4e-19 PF00053.14.fs 12/13 1109 1154 .. 1 59 [] 56.6 9.7e-16 PF00053.14.ls 12/13 1109 1154 .. 1 59 [] 58.3 2.3e-14 PF00053.14.ls 13/13 1157 1201 .. 1 59 [] 65.5 1.6e-16 PF00053.14.fs 13/13 1157 1201 .. 1 59 [] 63.8 8e-18 Alignments of top-scoring domains: PF00055.8.fs: domain 1 of 1, from 60 to 294: score 575.5, E = 1e-174 *->CyPAtgNLainradrlsatsTCGlhsPEeyCilshlqpGRPVrdKkC CyPAtg+L+i+ra++ls+tsTCGlh+PE+yCi+shlq+ dKkC hh00096 60 CYPATGDLLIGRAQKLSVTSTCGLHKPEPYCIVSHLQE-----DKKC 101 flCDsnspnkrddnpnsHpisflvdttnpqrlttWWQSetmlnGvqYpnn f+C+s++p+++++np+sH+i+++v+t++p+rl++WWQSe nGv + n hh00096 102 FICNSQDPYHETLNPDSHLIENVVTTFAPNRLKIWWQSE---NGV--E-N 145 VTitLDLeaeFhiTYvIikFkNtfRPEaamiieRSsDfGktWipYqYYay VTi+LDLeaeFh+T++I++Fk tfRP aam+ieRSsDfGktW++Y+Y+ay hh00096 146 VTIQLDLEAEFHFTHLIMTFK-TFRP-AAMLIERSSDFGKTWGVYRYFAY 193 dDsECeatYpgiprrpirtgraeddvlCTSrYSdiePlteGEViFsvLeG d Cea++pgi+++p+++ +dd++C+SrYSdieP+teGEViF++L+ hh00096 194 D---CEASFPGISTGPMKK---VDDIICDSRYSDIEPSTEGEVIFRALD- 236 RPsadifDpYSprlQewlkaTniRitLtRLhTLGDnLldsSHRelkeLdp P+++i+DpYSpr+Q++lk+Tn+Ri++++LhTLGDnLlds ++ hh00096 237 -PAFKIEDPYSPRIQNLLKITNLRIKFVKLHTLGDNLLDS--------RM 277 evlekYYYAIsDivVGG<-* e++ekYYYA++D+vV+G hh00096 278 EIREKYYYAVYDMVVRG 294 PF00055.8.ls: domain 1 of 1, from 60 to 294: score 577.4, E = 1.2e-170 *->CyPAtgNLainradrlsatsTCGlhsPEeyCilshlqpGRPVrdKkC CyPAtg+L+i+ra++ls+tsTCGlh+PE+yCi+shlq+ dKkC hh00096 60 CYPATGDLLIGRAQKLSVTSTCGLHKPEPYCIVSHLQE-----DKKC 101 flCDsnspnkrddnpnsHpisflvdttnpqrlttWWQSetmlnGvqYpnn f+C+s++p+++++np+sH+i+++v+t++p+rl++WWQSe nGv + n hh00096 102 FICNSQDPYHETLNPDSHLIENVVTTFAPNRLKIWWQSE---NGV--E-N 145 VTitLDLeaeFhiTYvIikFkNtfRPEaamiieRSsDfGktWipYqYYay VTi+LDLeaeFh+T++I++Fk tfRP aam+ieRSsDfGktW++Y+Y+ay hh00096 146 VTIQLDLEAEFHFTHLIMTFK-TFRP-AAMLIERSSDFGKTWGVYRYFAY 193 dDsECeatYpgiprrpirtgraeddvlCTSrYSdiePlteGEViFsvLeG d Cea++pgi+++p+++ +dd++C+SrYSdieP+teGEViF++L+ hh00096 194 D---CEASFPGISTGPMKK---VDDIICDSRYSDIEPSTEGEVIFRALD- 236 RPsadifDpYSprlQewlkaTniRitLtRLhTLGDnLldsSHRelkeLdp P+++i+DpYSpr+Q++lk+Tn+Ri++++LhTLGDnLlds ++ hh00096 237 -PAFKIEDPYSPRIQNLLKITNLRIKFVKLHTLGDNLLDS--------RM 277 evlekYYYAIsDivVGG<-* e++ekYYYA++D+vV+G hh00096 278 EIREKYYYAVYDMVVRG 294 PF00053.14.fs: domain 1 of 13, from 296 to 357: score 36.2, E = 7.8e-10 *->CdCnphGslsddtCdsddelf....geetGqClkCkpnvtGrrCdrC C C +h+ ++C + d++ ++ +g ++G+C C++n+ G +C+ C hh00096 296 CFCYGHA----SECAPVDGFNeeveGMVHGHCM-CRHNTKGLNCELC 337 kpGyyglpsg.....dpgqgC<-* ++ y++lp+++ +++++ C hh00096 338 MDFYHDLPWRpaegrNSN-AC 357 PF00053.14.ls: domain 1 of 13, from 296 to 357: score 38.1, E = 2.8e-08 *->CdCnphGslsddtCdsddelf....geetGqClkCkpnvtGrrCdrC C C +h+ ++C + d++ ++ +g ++G+C C++n+ G +C+ C hh00096 296 CFCYGHA----SECAPVDGFNeeveGMVHGHCM-CRHNTKGLNCELC 337 kpGyyglpsg.....dpgqgC<-* ++ y++lp+++ +++++ C hh00096 338 MDFYHDLPWRpaegrNSN-AC 357 PF00053.14.ls: domain 2 of 13, from 360 to 420: score 76.6, E = 7.3e-20 *->CdCnphGslsddtCdsddelf....geetGqClkCkpnvtGrrCdrC C+Cn+h+ +C++d++++ ++++++G+C++C++n++Gr+C++C hh00096 360 CNCNEHS----ISCHFDMAVYlatgNVSGGVCDDCQHNTMGRNCEQC 402 kpGyyglpsg...dpgqgC<-* kp yy+ p+++ +dp C hh00096 403 KPFYYQHPERdirDPN-FC 420 PF00053.14.fs: domain 2 of 13, from 360 to 420: score 74.7, E = 5.5e-21 *->CdCnphGslsddtCdsddelf....geetGqClkCkpnvtGrrCdrC C+Cn+h+ +C++d++++ ++++++G+C++C++n++Gr+C++C hh00096 360 CNCNEHS----ISCHFDMAVYlatgNVSGGVCDDCQHNTMGRNCEQC 402 kpGyyglpsg...dpgqgC<-* kp yy+ p+++ +dp C hh00096 403 KPFYYQHPERdirDPN-FC 420 PF00053.14.fs: domain 3 of 13, from 423 to 480: score 81.2, E = 7e-23 *->CdCnphGslsddtCdsddelf.geetGqClkCkpnvtGrrCdrCkpG C+C+p+Gs++++ Cds++++++g + GqC+ Ck nv+G++Cd Ck+G hh00096 423 CTCDPAGSQNEGICDSYTDFStGLIAGQCR-CKLNVEGEHCDVCKEG 468 yyglpsgdpgqgC<-* +y+l+s ++gC hh00096 469 FYDLSS-EDPFGC 480 PF00053.14.ls: domain 3 of 13, from 423 to 480: score 83.2, E = 7.7e-22 *->CdCnphGslsddtCdsddelf.geetGqClkCkpnvtGrrCdrCkpG C+C+p+Gs++++ Cds++++++g + GqC+ Ck nv+G++Cd Ck+G hh00096 423 CTCDPAGSQNEGICDSYTDFStGLIAGQCR-CKLNVEGEHCDVCKEG 468 yyglpsgdpgqgC<-* +y+l+s ++gC hh00096 469 FYDLSS-EDPFGC 480 PF00053.14.ls: domain 4 of 13, from 483 to 532: score 69.5, E = 9.7e-18 *->CdCnphGslsd.dtCdsddelfgeetGqClkCkpnvtGrrCdrCkpG C+Cnp+G+ +++ Cds etG+C Ck vtG++Cd+C+p hh00096 483 CACNPLGTIPGgNPCDS-------ETGHCY-CKRLVTGQHCDQCLPE 521 yyglpsgdpgqgC<-* ++gl++ d gC hh00096 522 HWGLSN-DLD-GC 532 PF00053.14.fs: domain 4 of 13, from 483 to 532: score 67.7, E = 5.7e-19 *->CdCnphGslsd.dtCdsddelfgeetGqClkCkpnvtGrrCdrCkpG C+Cnp+G+ +++ Cds etG+C Ck vtG++Cd+C+p hh00096 483 CACNPLGTIPGgNPCDS-------ETGHCY-CKRLVTGQHCDQCLPE 521 yyglpsgdpgqgC<-* ++gl++ d gC hh00096 522 HWGLSN-DLD-GC 532 PF00053.14.fs: domain 5 of 13, from 535 to 573: score 39.8, E = 7e-11 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy CdC++ G+l+ +C e+GqC+ C+p+ Gr+C++ +pGy hh00096 535 CDCDLGGALN-NSCFA-------ESGQCS-CRPHMIGRQCNEVEPGY 572 y<-* y hh00096 573 Y 573 PF00053.14.ls: domain 5 of 13, from 535 to 579: score 34.4, E = 3.7e-07 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy CdC++ G+l+ +C e+GqC+ C+p+ Gr+C++ +pGy hh00096 535 CDCDLGGALN-NSCFA-------ESGQCS-CRPHMIGRQCNEVEPGY 572 yglpsgdpgqgC<-* y +++ + hh00096 573 Y-FAT-LDH--- 579 PF00053.14.ls: domain 6 of 13, from 798 to 843: score 78.6, E = 1.8e-20 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+C+p+Gsls + Cd+ ++GqC+ C+pnv Gr C+rC+pG+ hh00096 798 CECDPQGSLS-SVCDP-------NGGQCQ-CRPNVVGRTCNRCAPGT 835 yglpsgdpgqgC<-* +g+ +p gC hh00096 836 FGF---GPS-GC 843 PF00053.14.fs: domain 6 of 13, from 798 to 843: score 76.8, E = 1.3e-21 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+C+p+Gsls + Cd+ ++GqC+ C+pnv Gr C+rC+pG+ hh00096 798 CECDPQGSLS-SVCDP-------NGGQCQ-CRPNVVGRTCNRCAPGT 835 yglpsgdpgqgC<-* +g+ +p gC hh00096 836 FGF---GPS-GC 843 PF00053.14.ls: domain 7 of 13, from 846 to 889: score 70.4, E = 5.2e-18 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+C+++Gs++ + C++ +tGqC+ C +v+ r+CdrC+pG+ hh00096 846 CECHLQGSVN-AFCNP-------VTGQCH-CFQGVYARQCDRCLPGH 883 yglpsgdpgqgC<-* + +++ +C hh00096 884 W-----GFP-SC 889 PF00053.14.fs: domain 7 of 13, from 846 to 889: score 68.7, E = 2.9e-19 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+C+++Gs++ + C++ +tGqC+ C +v+ r+CdrC+pG+ hh00096 846 CECHLQGSVN-AFCNP-------VTGQCH-CFQGVYARQCDRCLPGH 883 yglpsgdpgqgC<-* + +++ +C hh00096 884 W-----GFP-SC 889 PF00053.14.fs: domain 8 of 13, from 892 to 939: score 72.0, E = 3.4e-20 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+Cn+h+ d+Cd+ +tG+Cl+C+++++G +C+rC+ Gy hh00096 892 CQCNGHA----DDCDP-------VTGECLNCQDYTMGHNCERCLAGY 927 yglpsgdpgqgC<-* yg+p +++g C hh00096 928 YGDPIIGSGDHC 939 PF00053.14.ls: domain 8 of 13, from 892 to 939: score 73.8, E = 5.1e-19 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+Cn+h+ d+Cd+ +tG+Cl+C+++++G +C+rC+ Gy hh00096 892 CQCNGHA----DDCDP-------VTGECLNCQDYTMGHNCERCLAGY 927 yglpsgdpgqgC<-* yg+p +++g C hh00096 928 YGDPIIGSGDHC 939 PF00053.14.ls: domain 9 of 13, from 942 to 998: score 43.2, E = 8.5e-10 *->CdCnphGslsd...dtCdsddelfgeetGqClkCkpnvtGrrCdrCk C C+ +++++ +C++d+ + + +C+ C p++ G rCd C+ hh00096 942 CPCPDGPDSGRqfaRSCYQDPV---TLQLACV-CDPGYIGSRCDDCA 984 pGyyglpsgdpgqgC<-* Gy+g+ps g++C hh00096 985 SGYFGNPS-EVGGSC 998 PF00053.14.fs: domain 9 of 13, from 942 to 998: score 41.2, E = 2.7e-11 *->CdCnphGslsd...dtCdsddelfgeetGqClkCkpnvtGrrCdrCk C C+ +++++ +C++d+ + + +C+ C p++ G rCd C+ hh00096 942 CPCPDGPDSGRqfaRSCYQDPV---TLQLACV-CDPGYIGSRCDDCA 984 pGyyglpsgdpgqgC<-* Gy+g+ps g++C hh00096 985 SGYFGNPS-EVGGSC 998 PF00053.14.fs: domain 10 of 13, from 1001 to 1050: score 63.2, E = 1.2e-17 *->CdCnphGslsd.dtCdsddelfgeetGqClkCkpnvtGrrCdrCkpG C+C+++ ++ d++ Cd etG+ClkC+++++G++C C+ G hh00096 1001 CQCHNNIDTTDpEACDK-------ETGRCLKCLYHTEGEHCQFCRFG 1040 yyglpsgdpgqgC<-* yyg+ +q+C hh00096 1041 YYGD---ALRQDC 1050 PF00053.14.ls: domain 10 of 13, from 1001 to 1050: score 65.0, E = 2.3e-16 *->CdCnphGslsd.dtCdsddelfgeetGqClkCkpnvtGrrCdrCkpG C+C+++ ++ d++ Cd etG+ClkC+++++G++C C+ G hh00096 1001 CQCHNNIDTTDpEACDK-------ETGRCLKCLYHTEGEHCQFCRFG 1040 yyglpsgdpgqgC<-* yyg+ +q+C hh00096 1041 YYGD---ALRQDC 1050 PF00053.14.fs: domain 11 of 13, from 1053 to 1106: score 71.4, E = 5e-20 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C Cn +G+++ ++C+ +d+++++ tGqCl C+pnv G++CdrC+p++ hh00096 1053 CVCNYLGTVQ-EHCNGSDCQCDKATGQCL-CLPNVIGQNCDRCAPNT 1097 yglpsgdpgqgC<-* ++l +g gC hh00096 1098 WQL---ASGTGC 1106 PF00053.14.ls: domain 11 of 13, from 1053 to 1106: score 73.3, E = 7.4e-19 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C Cn +G+++ ++C+ +d+++++ tGqCl C+pnv G++CdrC+p++ hh00096 1053 CVCNYLGTVQ-EHCNGSDCQCDKATGQCL-CLPNVIGQNCDRCAPNT 1097 yglpsgdpgqgC<-* ++l +g gC hh00096 1098 WQL---ASGTGC 1106 PF00053.14.fs: domain 12 of 13, from 1109 to 1154: score 56.6, E = 9.7e-16 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+Cn + s + ++C+ +tGqC+ C p+++Gr C +C++ + hh00096 1109 CNCNAAHSFG-PSCNE-------FTGQCQ-CMPGFGGRTCSECQELF 1146 yglpsgdpgqgC<-* +g dp + C hh00096 1147 WG----DPDVEC 1154 PF00053.14.ls: domain 12 of 13, from 1109 to 1154: score 58.3, E = 2.3e-14 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy C+Cn + s + ++C+ +tGqC+ C p+++Gr C +C++ + hh00096 1109 CNCNAAHSFG-PSCNE-------FTGQCQ-CMPGFGGRTCSECQELF 1146 yglpsgdpgqgC<-* +g dp + C hh00096 1147 WG----DPDVEC 1154 PF00053.14.ls: domain 13 of 13, from 1157 to 1201: score 65.5, E = 1.6e-16 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy CdC+p+G ++Cd+ +tGqC+ C ++v+G+rCd C Gy hh00096 1157 CDCDPRGIET-PQCDQ-------STGQCV-CVEGVEGPRCDKCTRGY 1194 yglpsgdpgqgC<-* g ++ +C hh00096 1195 SG----VFP-DC 1201 PF00053.14.fs: domain 13 of 13, from 1157 to 1201: score 63.8, E = 8e-18 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy CdC+p+G ++Cd+ +tGqC+ C ++v+G+rCd C Gy hh00096 1157 CDCDPRGIET-PQCDQ-------STGQCV-CVEGVEGPRCDKCTRGY 1194 yglpsgdpgqgC<-* g ++ +C hh00096 1195 SG----VFP-DC 1201 //