hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-04452621/chunk_1/iprscan-20080812-04452621.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh00096 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00180 653.9 5.1e-192 13 SM00136 335.7 3.1e-96 1 SM00181 51.5 1.1e-10 8 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00136 1/1 54 294 .. 1 282 [] 335.7 3.1e-96 SM00180 1/13 296 357 .. 1 42 [] 37.2 2.3e-06 SM00180 2/13 360 420 .. 1 42 [] 51.6 1e-10 SM00180 3/13 423 480 .. 1 42 [] 57.5 1.7e-12 SM00180 4/13 483 532 .. 1 42 [] 57.6 1.7e-12 SM00180 5/13 535 579 .. 1 42 [] 47.8 1.4e-09 SM00180 6/13 798 843 .. 1 42 [] 66.2 4.1e-15 SM00181 1/8 799 844 .. 1 32 [] 15.1 10 SM00180 7/13 846 889 .. 1 42 [] 55.6 6.3e-12 SM00181 2/8 847 890 .. 1 32 [] 0.3 2.3e+02 SM00180 8/13 892 939 .. 1 42 [] 48.5 8.8e-10 SM00181 3/8 900 940 .. 1 32 [] 9.8 35 SM00180 9/13 942 998 .. 1 42 [] 34.9 1.1e-05 SM00181 4/8 943 981 .. 1 32 [] 5.4 84 SM00180 10/13 1001 1050 .. 1 42 [] 44.0 2e-08 SM00181 5/8 1014 1051 .. 1 32 [] 5.4 84 SM00180 11/13 1053 1106 .. 1 42 [] 54.7 1.2e-11 SM00181 6/8 1064 1091 .. 1 32 [] 3.3 1.3e+02 SM00181 7/8 1092 1140 .. 1 32 [] 2.3 1.6e+02 SM00180 12/13 1109 1154 .. 1 42 [] 45.4 7.7e-09 SM00180 13/13 1157 1201 .. 1 42 [] 53.0 4e-11 SM00181 8/8 1158 1202 .. 1 32 [] 9.8 35 Alignments of top-scoring domains: SM00136: domain 1 of 1, from 54 to 294: score 335.7, E = 3.1e-96 *->agrprrCyPefvNlAfgRkrpvtAtsTCGeqkrprPErYCklvghta ++++++CyP++++l++gR ++ +tsTCG++ PE YC++++ hh00096 54 GCAEGSCYPATGDLLIGRAQKLSVTSTCGLH---KPEPYCIVSH--- 94 etdliWsllekprteqgkkCdlCDarqptkedprr......sHpasnltD +++kkC++C+++ dp+ ++ +++sH ++n+++ hh00096 95 -------------LQEDKKCFICNSQ-----DPYHetlnpdSHLIENVVT 126 lnnp.nnptWWQSeplsnGpqynnVnLTLdLgkeFevtYVilkFcPNSPR p+ WWQSe++++ nV+++LdL++eF++t++i++F+ ++R hh00096 127 TFAPnRLKIWWQSENGVE-----NVTIQLDLEAEFHFTHLIMTFK--TFR 169 PeslailerStDfGkTWqPwQyySsqdaeCrrtFGrpprgaitkggneqe P +++++erS+DfGkTW +++y++++ C+ +F+++++g+ +k ++ hh00096 170 P-AAMLIERSSDFGKTWGVYRYFAYD---CEASFPGISTGPMKK---VDD 212 viCtseysdisPlegGeiafslLegRPsaedfdnSpvLQewvtATdiRvr iC s+ysdi+P++ Ge++f+ L++ +ed ++Sp +Q+ +++T++R+ hh00096 213 IICDSRYSDIEPSTEGEVIFRALDPAFKIED-PYSPRIQNLLKITNLRIK 261 ltRLntplgddlmdvnskeleerDpevtrrYyYaIsDlaVGG<-* + +L+t lgd+l+d ++ e++++YyYa++D++V+G hh00096 262 FVKLHT-LGDNLLD--------SRMEIREKYYYAVYDMVVRG 294 SM00180: domain 1 of 13, from 296 to 357: score 37.2, E = 2.3e-06 *->CdCnlpppvG....Cdp............tGqClnCkpnttGGrrCd C C+ G+ ++C p ++ +++ ++ +G+C C++nt G +C+ hh00096 296 CFCY-----GhaseCAPvdgfneevegmvHGHCM-CRHNTKG-LNCE 335 derCapGyy.............gC<-* C + y++ + ++ ++++++ C hh00096 336 --LCMDFYHdlpwrpaegrnsnAC 357 SM00180: domain 2 of 13, from 360 to 420: score 51.6, E = 1e-10 *->CdCnlpppvG..Cdp............tGqClnCkpnttGGrrCdde C+Cn + +C+++ +++ ++G+C++C++nt+G r+C+ hh00096 360 CNCN---EHSisCHFdmavylatgnvsGGVCDDCQHNTMG-RNCE-- 400 rCapGyy...........gC<-* +C+p yy++++++ ++++ C hh00096 401 QCKPFYYqhperdirdpnFC 420 SM00180: domain 3 of 13, from 423 to 480: score 57.5, E = 1.7e-12 *->CdCnlpppvG......Cdp.........tGqClnCkpnttGGrrCdd C C+ p+G+++++ Cd+ ++ +++ GqC+ Ck n++G ++Cd hh00096 423 CTCD---PAGsqnegiCDSytdfstgliAGQCR-CKLNVEG-EHCD- 463 erCapGyy........gC<-* C++G+y+ +++++ gC hh00096 464 -VCKEGFYdlssedpfGC 480 SM00180: domain 4 of 13, from 483 to 532: score 57.6, E = 1.7e-12 *->CdCnlpppvG.......Cdp.tGqClnCkpnttGGrrCdderCapGy C Cn p G+ +++++Cd++tG+C Ck +tG ++Cd +C+p + hh00096 483 CACN---PLGtipggnpCDSeTGHCY-CKRLVTG-QHCD--QCLPEH 522 y.......gC<-* ++ +++ +gC hh00096 523 WglsndldGC 532 SM00180: domain 5 of 13, from 535 to 579: score 47.8, E = 1.4e-09 *->CdCnlpppvG.....Cdp.tGqClnCkpnttGGrrCdderCapGyy. CdC+ +G +++C ++GqC C+p+ +G r+C+ + +pGyy hh00096 535 CDCD---LGGalnnsCFAeSGQCS-CRPHMIG-RQCN--EVEPGYYf 574 ...gC<-* + + hh00096 575 atlDH 579 SM00180: domain 6 of 13, from 798 to 843: score 66.2, E = 4.1e-15 *->CdCnlpppvG.....Cdp.tGqClnCkpnttGGrrCdderCapGyy. C+C+ p+G+ ++ Cdp++GqC+ C+pn++G r C+ rCapG ++ hh00096 798 CECD---PQGslssvCDPnGGQCQ-CRPNVVG-RTCN--RCAPGTFg 837 ....gC<-* +++gC hh00096 838 fgpsGC 843 SM00181: domain 1 of 8, from 799 to 844: score 15.1, E = 10 *->eCa.......pCsnGgtEqnGtCi......sytC..CpgpGytg... eC+++++ ++ C+++g G+C+ +++ + tC++C+ pG g ++ hh00096 799 ECDpqgslssVCDPNG----GQCQcrpnvvGRTCnrCA-PGTFGfgp 840 .rCe<-* + C+ hh00096 841 sGCK 844 SM00180: domain 7 of 13, from 846 to 889: score 55.6, E = 6.3e-12 *->CdCnlpppvG.....Cdp.tGqClnCkpnttGGrrCdderCapGyy. C+C+ +G+ + C+p tGqC+ C ++ r+Cd rC+pG+++ hh00096 846 CECH---LQGsvnafCNPvTGQCH-CFQGVYA-RQCD--RCLPGHWg 885 ..gC<-* ++C hh00096 886 fpSC 889 SM00181: domain 2 of 8, from 847 to 890: score 0.3, E = 2.3e+02 *->eCa.......pCsnGgtEqnGtCi......sytC..CpgpGytg..r eC+ +++ + C + G+C+ + +C++C pG g ++ hh00096 847 ECHlqgsvnaFCNPVT----GQCHcfqgvyARQCdrCL-PGHWGfpS 888 Ce<-* C+ hh00096 889 CQ 890 SM00180: domain 8 of 13, from 892 to 939: score 48.5, E = 8.8e-10 *->CdCnlpppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyy.. C+Cn G+ ++Cdp tG ClnC++ t+G +C+ rC+ Gyy++ hh00096 892 CQCN-----GhaddCDPvTGECLNCQDYTMG-HNCE--RCLAGYYgd 930 .......gC<-* + +++++C hh00096 931 piigsgdHC 939 SM00181: domain 3 of 8, from 900 to 940: score 9.8, E = 35 *->eCa....pCsnGgtEqnGtCi....sytC..CpgpGytg........ +C++ ++ C n C++ + ++ C++C +Gy+g++ ++++ hh00096 900 DCDpvtgECLN--------CQdytmGHNCerCL-AGYYGdpiigsgd 937 rCe<-* +C hh00096 938 HCR 940 SM00180: domain 9 of 13, from 942 to 998: score 34.9, E = 1.1e-05 *->CdCnl.pppvG......Cdp.....tGqClnCkpnttGGrrCdderC C+C+++p+ +G++ ++C++++ + C+ C p+++G rCd C hh00096 942 CPCPDgPD-SGrqfarsCYQdpvtlQLACV-CDPGYIG-SRCD--DC 983 apGyy........gC<-* a Gy++++++ +++C hh00096 984 ASGYFgnpsevggSC 998 SM00181: domain 4 of 8, from 943 to 981: score 5.4, E = 84 *->eCa...........pCsnGgtEqnGtCi.sytC.CpgpGytg.rCe< +C ++++++++ + C ++ + C C pGy+g+rC hh00096 943 PCPdgpdsgrqfarSCYQD------PVTlQLACvCD-PGYIGsRCD 981 -* hh00096 - - SM00180: domain 10 of 13, from 1001 to 1050: score 44.0, E = 2e-08 *->CdCnlpppvG.........Cdp.tGqClnCkpnttGGrrCdderCap C+C+ ++ ++++++ Cd++tG+Cl+C +t+G ++C C+ hh00096 1001 CQCH-----NnidttdpeaCDKeTGRCLKCLYHTEG-EHCQ--FCRF 1039 Gyy......gC<-* Gyy++ +++C hh00096 1040 GYYgdalrqDC 1050 SM00181: domain 5 of 8, from 1014 to 1051: score 5.4, E = 84 *->eCa....pCsnGgtEqnGtCi....sytC..CpgpGytg.....rCe C+++++ C +C+ ++++ +C+ C+ Gy+g+ ++ C hh00096 1014 ACDketgRCL--------KCLyhteGEHCqfCR-FGYYGdalrqDCR 1051 <-* hh00096 - - SM00180: domain 11 of 13, from 1053 to 1106: score 54.7, E = 1.2e-11 *->CdCnlpppvG............Cdp.tGqClnCkpnttGGrrCdder C Cn G+ +++ ++++ +Cd+ tGqCl C pn++G ++Cd r hh00096 1053 CVCN---YLGtvqehcngsdcqCDKaTGQCL-CLPNVIG-QNCD--R 1092 CapGyy......gC<-* Cap+ ++ +++gC hh00096 1093 CAPNTWqlasgtGC 1106 SM00181: domain 6 of 8, from 1064 to 1091: score 3.3, E = 1.3e+02 *->eCa..pCsnGgtEqnGtCi..sytC.CpgpGytg.rCe<-* C +++C+ C + + +C C p +g++C hh00096 1064 HCNgsDCQ---------CDkaTGQClCL-PNVIGqNCD 1091 SM00181: domain 7 of 8, from 1092 to 1140: score 2.3, E = 1.6e+02 *->eCa..........pCsnGgtEqnGtCi..............sytC.C Ca+++ + ++++C+ C + ++ +++ ++ + +C+C hh00096 1092 RCApntwqlasgtGCD--------PCNcnaahsfgpscnefTGQCqC 1130 pgpGytg.rCe<-* pG+ g++C hh00096 1131 M-PGFGGrTCS 1140 SM00180: domain 12 of 13, from 1109 to 1154: score 45.4, E = 7.7e-09 *->CdCnlpppvG.....Cdp.tGqClnCkpnttGGrrCdderCapGyy. C+Cn ++++ +++C+ tGqC+ C p+ +GGr C +C++ +++ hh00096 1109 CNCN---AAHsfgpsCNEfTGQCQ-CMPG-FGGRTCS--ECQELFWg 1148 ....gC<-* +++ +C hh00096 1149 dpdvEC 1154 SM00180: domain 13 of 13, from 1157 to 1201: score 53.0, E = 4e-11 *->CdCnlpppvG.....Cdp.tGqClnCkpnttGGrrCdderCapGyy. CdC+ p+G ++++Cd++tGqC+ C ++++G +rCd +C Gy + hh00096 1157 CDCD---PRGietpqCDQsTGQCV-CVEGVEG-PRCD--KCTRGYSg 1196 ...gC<-* ++C hh00096 1197 vfpDC 1201 SM00181: domain 8 of 8, from 1158 to 1202: score 9.8, E = 35 *->eCa.......pCsnGgtEqnGtCi......sytC..CpgpGytg... +C++++ +++ C++ G+C+ ++ ++++C++C Gy+g + hh00096 1158 DCDprgietpQCDQST----GQCVcvegveGPRCdkCT-RGYSGvfp 1199 rCe<-* C hh00096 1200 DCT 1202 //