hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-04563244/chunk_1/iprscan-20080812-04563244.nocrc
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Query sequence: hh00225
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
PF00999.11.ls  Sodium/hydrogen exchanger family         344.4   1.8e-100   1
PF00999.11.fs  Sodium/hydrogen exchanger family         342.5   6.4e-100   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
PF00999.11.fs    1/1      45   502 ..     1   450 []   342.5 6.4e-100
PF00999.11.ls    1/1      45   502 ..     1   450 []   344.4 1.8e-100

Alignments of top-scoring domains:
PF00999.11.fs: domain 1 of 1, from 45 to 502: score 342.5, E = 6.4e-100
                   *->avillvlallaglvfllarrlgplPpvvglilaGillGpsglglqim
                      +++l +++l ++l+++   r+  l+++ + +++G+l+G  +      
     hh00225    45    ILLLTLTILTIWLFKHRRARF--LHETGLAMIYGLLVGLVLRY---- 85   

                   mflpvepdl..................................s..l..k
                     ++v++d+++ + + + ++++++   + +++  +   +++ +s++l+++
     hh00225    86 -GIHVPSDVnnvtlscevqsspttllvnvsgkfyeymlkgeisSheLnnV 134  

                   vealfpadveldlevlaelGlilLlFlaGleldlrelrkngksilllall
                   ++     +v++d+ev+++++l++++F+aG+ l  r++++n++sil++a+l
     hh00225   135 QDNEMLRKVTFDPEVFFNILLPPIIFYAGYSLKRRHFFRNLGSILAYAFL 184  

                   gvllpflliGlllallllglalfl.gllvlgipllealffGaalsatspv
                   g+++++++iG +++  ++  ++  +g+l ++++++++l+fGa++sat+pv
     hh00225   185 GTAISCFVIGSIMY--GCVTLMKVtGQLAGDFYFTDCLLFGAIVSATDPV 232  

                   vvlaiLkergrlntrlgtlilgesvlnDavavvlLavllala.segggev
                   +vlai+  +  ++ +l+ l++gesvlnDava+vl + ++a ++++  +++
     hh00225   233 TVLAIF-HELQVDVELYALLFGESVLNDAVAIVLSSSIVAYQpAGDNSHT 281  

                   gglsdlglllliflvvalgglllglvfpwllrlitrftdfrgydgdrele
                      +  +  + ifl ++ g+++ g++ + +++l+t+ft++r+    + le
     hh00225   282 FDVTAMFKSIGIFLGIFSGSFAMGAATGVVTALVTKFTKLRE---FQLLE 328  

                   vllvlalallaallaellGlsgilGaFlaGlvlsrlnyafaneklseksr
                   + l++++++ ++llae++G+ g+++++++G++++  +y ++n  ls +s+
     hh00225   329 TGLFFLMSWSTFLLAEAWGFTGVVAVLFCGITQA--HYTYNN--LSTESQ 374  

                   t.lepfgymlsglfiplFFvlvGlsldlsvllfdalgprgtss.hlslll
                   ++++++++ l +l++ ++F ++Gl l+             t+++h ++  
     hh00225   375 HrTKQLFELLNFLAENFIFSYMGLTLF-------------TFQnHVFNPT 411  

                   lvllllvaillgKllgvfllarllnkFrrgklslrealivgllllqRGav
                   +v+++ vai+lg++  +++l++lln+ rr k+++  ++++++++l RGa+
     hh00225   412 FVVGAFVAIFLGRAANIYPLSLLLNLGRRSKIGSNFQHMMMFAGL-RGAM 460  

                   alalaaiglqlgglidreliytllvivvllttlvqGltlkpllkk<-*
                   a+ala +  ++    +r++++++++++v++t++v+G+ ++++l +   
     hh00225   461 AFALAIRDTAT---YARQMMFSTTLLIVFFTVWVFGGGTTAMLSC    502  

PF00999.11.ls: domain 1 of 1, from 45 to 502: score 344.4, E = 1.8e-100
                   *->avillvlallaglvfllarrlgplPpvvglilaGillGpsglglqim
                      +++l +++l ++l+++   r+  l+++ + +++G+l+G  +      
     hh00225    45    ILLLTLTILTIWLFKHRRARF--LHETGLAMIYGLLVGLVLRY---- 85   

                   mflpvepdl..................................s..l..k
                     ++v++d+++ + + + ++++++   + +++  +   +++ +s++l+++
     hh00225    86 -GIHVPSDVnnvtlscevqsspttllvnvsgkfyeymlkgeisSheLnnV 134  

                   vealfpadveldlevlaelGlilLlFlaGleldlrelrkngksilllall
                   ++     +v++d+ev+++++l++++F+aG+ l  r++++n++sil++a+l
     hh00225   135 QDNEMLRKVTFDPEVFFNILLPPIIFYAGYSLKRRHFFRNLGSILAYAFL 184  

                   gvllpflliGlllallllglalfl.gllvlgipllealffGaalsatspv
                   g+++++++iG +++  ++  ++  +g+l ++++++++l+fGa++sat+pv
     hh00225   185 GTAISCFVIGSIMY--GCVTLMKVtGQLAGDFYFTDCLLFGAIVSATDPV 232  

                   vvlaiLkergrlntrlgtlilgesvlnDavavvlLavllala.segggev
                   +vlai+  +  ++ +l+ l++gesvlnDava+vl + ++a ++++  +++
     hh00225   233 TVLAIF-HELQVDVELYALLFGESVLNDAVAIVLSSSIVAYQpAGDNSHT 281  

                   gglsdlglllliflvvalgglllglvfpwllrlitrftdfrgydgdrele
                      +  +  + ifl ++ g+++ g++ + +++l+t+ft++r+    + le
     hh00225   282 FDVTAMFKSIGIFLGIFSGSFAMGAATGVVTALVTKFTKLRE---FQLLE 328  

                   vllvlalallaallaellGlsgilGaFlaGlvlsrlnyafaneklseksr
                   + l++++++ ++llae++G+ g+++++++G++++  +y ++n  ls +s+
     hh00225   329 TGLFFLMSWSTFLLAEAWGFTGVVAVLFCGITQA--HYTYNN--LSTESQ 374  

                   t.lepfgymlsglfiplFFvlvGlsldlsvllfdalgprgtss.hlslll
                   ++++++++ l +l++ ++F ++Gl l+             t+++h ++  
     hh00225   375 HrTKQLFELLNFLAENFIFSYMGLTLF-------------TFQnHVFNPT 411  

                   lvllllvaillgKllgvfllarllnkFrrgklslrealivgllllqRGav
                   +v+++ vai+lg++  +++l++lln+ rr k+++  ++++++++l RGa+
     hh00225   412 FVVGAFVAIFLGRAANIYPLSLLLNLGRRSKIGSNFQHMMMFAGL-RGAM 460  

                   alalaaiglqlgglidreliytllvivvllttlvqGltlkpllkk<-*
                   a+ala +  ++    +r++++++++++v++t++v+G+ ++++l +   
     hh00225   461 AFALAIRDTAT---YARQMMFSTTLLIVFFTVWVFGGGTTAMLSC    502  

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