hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-04563244/chunk_1/iprscan-20080812-04563244.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hh00225
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00840 b_cpa1: sodium/hydrogen exchanger 3            187.1    1.4e-53   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00840   1/1      31   654 ..     1   627 []   187.1  1.4e-53

Alignments of top-scoring domains:
TIGR00840: domain 1 of 1, from 31 to 654: score 187.1, E = 1.4e-53
                   *->dyehvqkPyeivLwILLaSLaKigfHLt.hkvlrvvPESvLLIvyGl
                       + h q+ +     ILL +L   +  L +h++ r ++E+ L ++yGl
     hh00225    31    EESHRQDSANLLIFILLLTLTILTIWLFkHRRARFLHETGLAMIYGL 77   

                   lvGgiik....................................aldhHYI
                   lvG++ + + + +++ ++ + + + ++++++   + +++  + +l +   
     hh00225    78 LVGLVLRygihvpsdvnnvtlscevqsspttllvnvsgkfyeyMLKG--E 125  

                   idp..............ptLdsslFFlyLLPPIVLdAGYfmpkreFfeNL
                   i++++ ++ ++++  +++t+d+ +FF++LLPPI+  AGY++  r Ff NL
     hh00225   126 ISShelnnvqdnemlrkVTFDPEVFFNILLPPIIFYAGYSLKRRHFFRNL 175  

                   gsILlFAvvGTlinAfvlGlsLYgIcl...iggfgsidIgLLdnLlFGsl
                   gsIL +A +GT i+ fv+G ++Yg  +  ++ g   +d  + d LlFG++
     hh00225   176 GSILAYAFLGTAISCFVIGSIMYGCVTlmkVTGQLAGDFYFTDCLLFGAI 225  

                   ISAVDPVaVLavFeElhVnekLyilIFGESLLNDAVtvVLYntfekFikl
                   +SA+DPV+VLa+F El V+  Ly l FGES LNDAV +VL     +    
     hh00225   226 VSATDPVTVLAIFHELQVDVELYALLFGESVLNDAVAIVLSSSIVAYQPA 275  

                   SDasdeavtivdvveGcvsfFvvtlGvGlLvGVvfGflvafitrfTkhir
                    D        +  +++ ++ F+  ++ +   G+  G++ a++t+fTk + 
     hh00225   276 GDN-SHTFDVTAMFKS-IGIFLGIFSGSFAMGAATGVVTALVTKFTKLRE 323  

                   YPvIEPlfvllisYlSYLlAEtlhlSGILAlifCGitmkkYveaNiSreS
                   +   E ++ +l s    LlAE     G +A +fCGit  +Y + N S eS
     hh00225   324 FQLLETGLFFLMSWSTFLLAEAWGFTGVVAVLFCGITQAHYTYNNLSTES 373  

                   etTikYfmKmlsSlSEtlIFifLGvSlVs.enhewnwplaFvvvTlvfCv
                   +   k  + +l  l+E++IF ++G+ l++ +nh +n   +Fvv + v + 
     hh00225   374 QHRTKQLFELLNFLAENFIFSYMGLTLFTfQNHVFNP--TFVVGAFVAIF 421  

                   ARWCAVFPLSQFVNWiYRvlgvltLswilNeFrSvkvelpfkDQlvifya
                                  + R+  +  Ls  lN+ r    ++  + Q ++ +a
     hh00225   422 ---------------LGRAANIYPLSLLLNLGR--RSKIGSNFQHMMMFA 454  

                   GlRGAVafaLallldekifpaKklFvtTtLvVvffTVIfQGlTIkplvev
                   GlRGA afaLa  +  +   a     +TtL +vffTV ++G+ +  ++ +
     hh00225   455 GLRGAMAFALA--IRDTATYARQMMFSTTLLIVFFTVWVFGGGTTAMLSC 502  

                   Lkvkkddks.kekinEelhlrllDHllpgIEDicGqygHdklidKlnkfd
                   L ++ +  s+ e +  +   r  +   +             l   + +fd
     hh00225   503 LHIRVGVDSdQEHLGVPENERRTTKAES-----------AWLFRMWYNFD 541  

                   kkylkkvlirrnspkssikiva....vyhklnlkqaIslvee........
                   + ylk  l+    p+    + a  ++++  l  +qa + +e  ++++++ 
     hh00225   542 HNYLKPLLTHSGPPLTT-TLPAccgpIARCLTSPQAYENQEQlkdddsdl 590  

                   ..GerrkllsfvgtnStdNivnvDFstPepsnsepivsYFLREnvsAvgl
                     ++   +l+ + +               + n+ep               
     hh00225   591 ilNDGDISLTYGDS---------------TVNTEPA----------TSSA 615  

                   palSsedkeeeiRdtEDmvtHHiLstnlykprQrlqsrYsrhvLkpvpnE
                   p++  ++      d         L + l     +l  r  r vL  + +E
     hh00225   616 PRRFMGNSS---ED--------ALDRELAFGDHELVIRGTRLVLPMDDSE 654  

                   <-*
                      
     hh00225     -     -    

//