hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-05014842/chunk_1/iprscan-20080812-05014842.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh00253 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 264.9 1.5e-76 10 PF00096.16.fs Zinc finger, C2H2 type 244.9 1.6e-70 10 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00096.16.ls 1/10 338 362 .. 1 24 [] 27.5 4.3e-05 PF00096.16.fs 1/10 338 362 .. 1 24 [] 25.5 4.1e-05 PF00096.16.fs 2/10 371 395 .. 1 24 [] 31.5 1.3e-06 PF00096.16.ls 2/10 371 395 .. 1 24 [] 33.5 6.7e-07 PF00096.16.ls 3/10 401 425 .. 1 24 [] 31.5 2.7e-06 PF00096.16.fs 3/10 401 425 .. 1 24 [] 29.5 4.1e-06 PF00096.16.ls 4/10 431 453 .. 1 24 [] 30.7 4.9e-06 PF00096.16.fs 4/10 431 453 .. 1 24 [] 28.7 6.6e-06 PF00096.16.ls 5/10 460 484 .. 1 24 [] 25.0 0.00024 PF00096.16.fs 5/10 460 484 .. 1 24 [] 23.0 0.00017 PF00096.16.ls 6/10 491 515 .. 1 24 [] 20.9 0.0043 PF00096.16.ls 7/10 521 545 .. 1 24 [] 27.1 5.7e-05 PF00096.16.fs 7/10 521 545 .. 1 24 [] 25.1 5.2e-05 PF00096.16.ls 8/10 551 575 .. 1 24 [] 32.2 1.7e-06 PF00096.16.fs 8/10 551 575 .. 1 24 [] 30.2 2.9e-06 PF00096.16.ls 10/10 614 639 .. 1 24 [] 19.2 0.014 Alignments of top-scoring domains: PF00096.16.ls: domain 1 of 10, from 338 to 362: score 27.5, E = 4.3e-05 *->ykCpf.dCgksFsrksnLkrHlrtH<-* y Cp +Cg++F k++Lk Hl tH hh00253 338 YLCPEaQCGQTFAKKHQLKVHLLTH 362 PF00096.16.fs: domain 1 of 10, from 338 to 362: score 25.5, E = 4.1e-05 *->ykCpf.dCgksFsrksnLkrHlrtH<-* y Cp +Cg++F k++Lk Hl tH hh00253 338 YLCPEaQCGQTFAKKHQLKVHLLTH 362 PF00096.16.fs: domain 2 of 10, from 371 to 395: score 31.5, E = 1.3e-06 *->ykCpf.dCgksFsrksnLkrHlrtH<-* +kCp ++Cg +F++++ LkrHl++H hh00253 371 FKCPLgGCGWTFTTSYKLKRHLQSH 395 PF00096.16.ls: domain 2 of 10, from 371 to 395: score 33.5, E = 6.7e-07 *->ykCpf.dCgksFsrksnLkrHlrtH<-* +kCp ++Cg +F++++ LkrHl++H hh00253 371 FKCPLgGCGWTFTTSYKLKRHLQSH 395 PF00096.16.ls: domain 3 of 10, from 401 to 425: score 31.5, E = 2.7e-06 *->ykCpf.dCgksFsrksnLkrHlrtH<-* + Cp ++CgksF++ +nLk+H++ H hh00253 401 FGCPAeGCGKSFTTVYNLKAHMKGH 425 PF00096.16.fs: domain 3 of 10, from 401 to 425: score 29.5, E = 4.1e-06 *->ykCpf.dCgksFsrksnLkrHlrtH<-* + Cp ++CgksF++ +nLk+H++ H hh00253 401 FGCPAeGCGKSFTTVYNLKAHMKGH 425 PF00096.16.ls: domain 4 of 10, from 431 to 453: score 30.7, E = 4.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C +sF +++ L +H+r+H hh00253 431 FKCE-VCEESFPTQAKLSAHQRSH 453 PF00096.16.fs: domain 4 of 10, from 431 to 453: score 28.7, E = 6.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +C +sF +++ L +H+r+H hh00253 431 FKCE-VCEESFPTQAKLSAHQRSH 453 PF00096.16.ls: domain 5 of 10, from 460 to 484: score 25.0, E = 0.00024 *->ykCpf.dCgksFsrksnLkrHlrtH<-* y+C f++C+k+F + s L +H r H hh00253 460 YQCAFsGCKKTFITVSALFSHNRAH 484 PF00096.16.fs: domain 5 of 10, from 460 to 484: score 23.0, E = 0.00017 *->ykCpf.dCgksFsrksnLkrHlrtH<-* y+C f++C+k+F + s L +H r H hh00253 460 YQCAFsGCKKTFITVSALFSHNRAH 484 PF00096.16.ls: domain 6 of 10, from 491 to 515: score 20.9, E = 0.0043 *->ykCpf.dCgksFsrksnLkrHlrtH<-* ++C+f++C k + Lk Hlr+H hh00253 491 FSCSFpGCSKQYDKACRLKIHLRSH 515 PF00096.16.ls: domain 7 of 10, from 521 to 545: score 27.1, E = 5.7e-05 *->ykCpf.dCgksFsrksnLkrHlrtH<-* + C+f++Cg F++ s L rH+r+H hh00253 521 FLCDFdGCGWNFTSMSKLLRHKRKH 545 PF00096.16.fs: domain 7 of 10, from 521 to 545: score 25.1, E = 5.2e-05 *->ykCpf.dCgksFsrksnLkrHlrtH<-* + C+f++Cg F++ s L rH+r+H hh00253 521 FLCDFdGCGWNFTSMSKLLRHKRKH 545 PF00096.16.ls: domain 8 of 10, from 551 to 575: score 32.2, E = 1.7e-06 *->ykCpf.dCgksFsrksnLkrHlrtH<-* ++Cp+++CgksF+r ++Lk H tH hh00253 551 FMCPVeGCGKSFTRAEHLKGHSITH 575 PF00096.16.fs: domain 8 of 10, from 551 to 575: score 30.2, E = 2.9e-06 *->ykCpf.dCgksFsrksnLkrHlrtH<-* ++Cp+++CgksF+r ++Lk H tH hh00253 551 FMCPVeGCGKSFTRAEHLKGHSITH 575 PF00096.16.ls: domain 10 of 10, from 614 to 639: score 19.2, E = 0.014 *->ykCpf.dCgksFsrksnLkrHlrt.H<-* +Cp++ C+k F++k+++k+H+ ++H hh00253 614 SRCPIsSCNKLFTSKHSMKTHMVKrH 639 //