hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-05014842/chunk_1/iprscan-20080812-05014842.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hh00253
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00355                                                 264.7    7.2e-75  10

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00355      1/10    338   362 ..     1    23 []    26.2   0.0046
SM00355      2/10    371   395 ..     1    23 []    34.1  1.9e-05
SM00355      3/10    401   425 ..     1    23 []    27.6   0.0017
SM00355      4/10    431   453 ..     1    23 []    28.3   0.0011
SM00355      5/10    460   484 ..     1    23 []    25.4   0.0082
SM00355      6/10    491   515 ..     1    23 []    23.5     0.03
SM00355      7/10    521   545 ..     1    23 []    26.0   0.0051
SM00355      8/10    551   575 ..     1    23 []    28.0   0.0013
SM00355      9/10    581   605 ..     1    23 []    22.6    0.054
SM00355     10/10    614   639 ..     1    23 []    23.0     0.04

Alignments of top-scoring domains:
SM00355: domain 1 of 10, from 338 to 362: score 26.2, E = 0.0046
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      y Cp+ +Cg++f  k++Lk H+ +H   
     hh00253   338    YLCPEaQCGQTFAKKhQLKVHLLTH    362  

SM00355: domain 2 of 10, from 371 to 395: score 34.1, E = 1.9e-05
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      +kCp++gCg++f++   LkrH+++H   
     hh00253   371    FKCPLgGCGWTFTTSyKLKRHLQSH    395  

SM00355: domain 3 of 10, from 401 to 425: score 27.6, E = 0.0017
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      + Cp +gCgksf++  +Lk Hm+ H   
     hh00253   401    FGCPAeGCGKSFTTVyNLKAHMKGH    425  

SM00355: domain 4 of 10, from 431 to 453: score 28.3, E = 0.0011
                   *->ykCpigCgksfssk.aLkrHmrvH<-*
                      +kC++ C +sf+++  L  H+r+H   
     hh00253   431    FKCEV-CEESFPTQaKLSAHQRSH    453  

SM00355: domain 5 of 10, from 460 to 484: score 25.4, E = 0.0082
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      y+C ++gC+k+f + +aL  H r H   
     hh00253   460    YQCAFsGCKKTFITVsALFSHNRAH    484  

SM00355: domain 6 of 10, from 491 to 515: score 23.5, E = 0.03
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      + C+++gC+k++  +  Lk H+r+H   
     hh00253   491    FSCSFpGCSKQYDKAcRLKIHLRSH    515  

SM00355: domain 7 of 10, from 521 to 545: score 26.0, E = 0.0051
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      + C+++gCg+ f+s + L rH r+H   
     hh00253   521    FLCDFdGCGWNFTSMsKLLRHKRKH    545  

SM00355: domain 8 of 10, from 551 to 575: score 28.0, E = 0.0013
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      + Cp++gCgksf+++++Lk H  +H   
     hh00253   551    FMCPVeGCGKSFTRAeHLKGHSITH    575  

SM00355: domain 9 of 10, from 581 to 605: score 22.6, E = 0.054
                   *->ykCpi.gCgksfssk.aLkrHmrvH<-*
                      ++Cp+ gC  +fs +++L  H ++H   
     hh00253   581    FVCPVaGCCARFSARsSLYIHSKKH    605  

SM00355: domain 10 of 10, from 614 to 639: score 23.0, E = 0.04
                   *->ykCpi.gCgksfssk.aLkrHmr.vH<-*
                       +Cpi+ C+k f+sk+++k Hm ++H   
     hh00253   614    SRCPIsSCNKLFTSKhSMKTHMVkRH    639  

//