hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-16502914/chunk_1/iprscan-20090525-16502914.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh00495 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 536.5 2.7e-158 17 PF00096.16.fs Zinc finger, C2H2 type 503.0 3.2e-148 17 PF01286.9.fs XPA protein N-terminal 91.7 2.2e-25 15 PF01352.17.fs KRAB box 68.0 1.2e-18 1 PF01352.17.ls KRAB box 70.0 7.1e-18 1 PF01096.9.fs Transcription factor S-II (TFIIS) 55.5 1.7e-16 16 PF07754.2.fs Domain of unknown function (DUF1610) 25.5 8.3e-06 13 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 44 84 .. 1 41 [] 68.0 1.2e-18 PF01352.17.ls 1/1 44 84 .. 1 41 [] 70.0 7.1e-18 PF00096.16.ls 1/17 226 248 .. 1 24 [] 25.4 0.00019 PF00096.16.fs 1/17 226 248 .. 1 24 [] 23.4 0.00014 PF00096.16.ls 2/17 254 276 .. 1 24 [] 34.6 3.3e-07 PF00096.16.fs 2/17 254 276 .. 1 24 [] 32.6 7.2e-07 PF00096.16.ls 3/17 282 304 .. 1 24 [] 32.3 1.6e-06 PF00096.16.fs 3/17 282 304 .. 1 24 [] 30.3 2.6e-06 PF00096.16.ls 4/17 310 332 .. 1 24 [] 34.6 3.2e-07 PF00096.16.fs 4/17 310 332 .. 1 24 [] 32.6 7.1e-07 PF00096.16.ls 5/17 338 360 .. 1 24 [] 30.3 6.3e-06 PF00096.16.fs 5/17 338 360 .. 1 24 [] 28.3 8.2e-06 PF00096.16.fs 6/17 366 388 .. 1 24 [] 27.7 1.2e-05 PF00096.16.ls 6/17 366 388 .. 1 24 [] 29.7 9.5e-06 PF00096.16.ls 7/17 394 416 .. 1 24 [] 23.1 0.00091 PF00096.16.ls 8/17 422 444 .. 1 24 [] 36.1 1.1e-07 PF00096.16.fs 8/17 422 444 .. 1 24 [] 34.1 3e-07 PF00096.16.ls 9/17 450 472 .. 1 24 [] 32.0 1.9e-06 PF00096.16.fs 9/17 450 472 .. 1 24 [] 30.1 3.1e-06 PF00096.16.ls 10/17 478 500 .. 1 24 [] 29.1 1.5e-05 PF00096.16.fs 10/17 478 500 .. 1 24 [] 27.1 1.7e-05 PF00096.16.ls 11/17 506 528 .. 1 24 [] 31.8 2.2e-06 PF00096.16.fs 11/17 506 528 .. 1 24 [] 29.8 3.5e-06 PF00096.16.ls 12/17 534 556 .. 1 24 [] 28.6 2e-05 PF00096.16.fs 12/17 534 556 .. 1 24 [] 26.7 2.1e-05 PF00096.16.ls 13/17 562 584 .. 1 24 [] 25.1 0.00022 PF00096.16.fs 13/17 562 584 .. 1 24 [] 23.2 0.00016 PF00096.16.fs 14/17 590 612 .. 1 24 [] 36.1 9.5e-08 PF00096.16.ls 14/17 590 612 .. 1 24 [] 38.1 2.9e-08 PF00096.16.fs 15/17 618 640 .. 1 24 [] 30.1 3e-06 PF00096.16.ls 15/17 618 640 .. 1 24 [] 32.1 1.9e-06 PF00096.16.fs 16/17 646 668 .. 1 24 [] 34.8 2e-07 PF00096.16.ls 16/17 646 668 .. 1 24 [] 36.8 6.9e-08 PF00096.16.fs 17/17 674 696 .. 1 24 [] 34.8 2e-07 PF00096.16.ls 17/17 674 696 .. 1 24 [] 36.8 6.9e-08 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 44 to 84: score 68.0, E = 1.2e-18 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* + FeDVa++F+qEEW+ L+ Qr L+ dVMlEN+ L S+g hh00495 44 MVFEDVAIHFSQEEWGILNDVQRHLHSDVMLENFALLSSVG 84 PF01352.17.ls: domain 1 of 1, from 44 to 84: score 70.0, E = 7.1e-18 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* + FeDVa++F+qEEW+ L+ Qr L+ dVMlEN+ L S+g hh00495 44 MVFEDVAIHFSQEEWGILNDVQRHLHSDVMLENFALLSSVG 84 PF00096.16.ls: domain 1 of 17, from 226 to 248: score 25.4, E = 0.00019 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+++++L H+++H hh00495 226 YSCT-QCGKDFCHQHTLFEHQKIH 248 PF00096.16.fs: domain 1 of 17, from 226 to 248: score 23.4, E = 0.00014 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+++++L H+++H hh00495 226 YSCT-QCGKDFCHQHTLFEHQKIH 248 PF00096.16.ls: domain 2 of 17, from 254 to 276: score 34.6, E = 3.3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +s+L +H+r H hh00495 254 YECS-ECGKLFRYNSDLIKHQRNH 276 PF00096.16.fs: domain 2 of 17, from 254 to 276: score 32.6, E = 7.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +s+L +H+r H hh00495 254 YECS-ECGKLFRYNSDLIKHQRNH 276 PF00096.16.ls: domain 3 of 17, from 282 to 304: score 32.3, E = 1.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs k+n +H+++H hh00495 282 YKCS-ECGKAFSLKYNVVQHQKIH 304 PF00096.16.fs: domain 3 of 17, from 282 to 304: score 30.3, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+Fs k+n +H+++H hh00495 282 YKCS-ECGKAFSLKYNVVQHQKIH 304 PF00096.16.ls: domain 4 of 17, from 310 to 332: score 34.6, E = 3.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F rks+L +H+r+H hh00495 310 YECS-ECGKAFLRKSHLLQHQRIH 332 PF00096.16.fs: domain 4 of 17, from 310 to 332: score 32.6, E = 7.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F rks+L +H+r+H hh00495 310 YECS-ECGKAFLRKSHLLQHQRIH 332 PF00096.16.ls: domain 5 of 17, from 338 to 360: score 30.3, E = 6.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F ++++L H+++H hh00495 338 YVCS-ECGKAFLTQAHLVGHQKIH 360 PF00096.16.fs: domain 5 of 17, from 338 to 360: score 28.3, E = 8.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F ++++L H+++H hh00495 338 YVCS-ECGKAFLTQAHLVGHQKIH 360 PF00096.16.fs: domain 6 of 17, from 366 to 388: score 27.7, E = 1.2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F +s L rH+++H hh00495 366 YGCN-ECGKYFMYSSALIRHQKVH 388 PF00096.16.ls: domain 6 of 17, from 366 to 388: score 29.7, E = 9.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F +s L rH+++H hh00495 366 YGCN-ECGKYFMYSSALIRHQKVH 388 PF00096.16.ls: domain 7 of 17, from 394 to 416: score 23.1, E = 0.00091 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C +Cgk F ++ +L H+r+H hh00495 394 FYCC-ECGKFFMDSCTLIIHQRVH 416 PF00096.16.ls: domain 8 of 17, from 422 to 444: score 36.1, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +s+L rH+++H hh00495 422 YECN-ECGKFFRYRSTLIRHQKVH 444 PF00096.16.fs: domain 8 of 17, from 422 to 444: score 34.1, E = 3e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +s+L rH+++H hh00495 422 YECN-ECGKFFRYRSTLIRHQKVH 444 PF00096.16.ls: domain 9 of 17, from 450 to 472: score 32.0, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F + s+L H+r+H hh00495 450 YECS-ECGKFFMDTSTLIIHQRVH 472 PF00096.16.fs: domain 9 of 17, from 450 to 472: score 30.1, E = 3.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F + s+L H+r+H hh00495 450 YECS-ECGKFFMDTSTLIIHQRVH 472 PF00096.16.ls: domain 10 of 17, from 478 to 500: score 29.1, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +L+rH+r+H hh00495 478 YECN-KCGKFFRYCFTLNRHQRVH 500 PF00096.16.fs: domain 10 of 17, from 478 to 500: score 27.1, E = 1.7e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+ +L+rH+r+H hh00495 478 YECN-KCGKFFRYCFTLNRHQRVH 500 PF00096.16.ls: domain 11 of 17, from 506 to 528: score 31.8, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F ++ +Lk+H+r+H hh00495 506 YECS-ECGKFFVDSCTLKSHQRVH 528 PF00096.16.fs: domain 11 of 17, from 506 to 528: score 29.8, E = 3.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F ++ +Lk+H+r+H hh00495 506 YECS-ECGKFFVDSCTLKSHQRVH 528 PF00096.16.ls: domain 12 of 17, from 534 to 556: score 28.6, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+ +s+L +H+r+H hh00495 534 FECS-ICGKSFRCRSTLDTHQRIH 556 PF00096.16.fs: domain 12 of 17, from 534 to 556: score 26.7, E = 2.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +CgksF+ +s+L +H+r+H hh00495 534 FECS-ICGKSFRCRSTLDTHQRIH 556 PF00096.16.ls: domain 13 of 17, from 562 to 584: score 25.1, E = 0.00022 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+++sn rH+r H hh00495 562 YECS-ECGKFFRHNSNHIRHRRNH 584 PF00096.16.fs: domain 13 of 17, from 562 to 584: score 23.2, E = 0.00016 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F+++sn rH+r H hh00495 562 YECS-ECGKFFRHNSNHIRHRRNH 584 PF00096.16.fs: domain 14 of 17, from 590 to 612: score 36.1, E = 9.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++Fs++s+L rH+++H hh00495 590 FECT-ECGRVFSQNSHLIRHQKVH 612 PF00096.16.ls: domain 14 of 17, from 590 to 612: score 38.1, E = 2.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cg++Fs++s+L rH+++H hh00495 590 FECT-ECGRVFSQNSHLIRHQKVH 612 PF00096.16.fs: domain 15 of 17, from 618 to 640: score 30.1, E = 3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F ++s+L +H r+H hh00495 618 YKCS-KCGKFFMDSSTLISHERVH 640 PF00096.16.ls: domain 15 of 17, from 618 to 640: score 32.1, E = 1.9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk F ++s+L +H r+H hh00495 618 YKCS-KCGKFFMDSSTLISHERVH 640 PF00096.16.fs: domain 16 of 17, from 646 to 668: score 34.8, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s+L +H+r+H hh00495 646 YECS-ECGKVFRYNSSLIKHRRIH 668 PF00096.16.ls: domain 16 of 17, from 646 to 668: score 36.8, E = 6.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F+ +s+L +H+r+H hh00495 646 YECS-ECGKVFRYNSSLIKHRRIH 668 PF00096.16.fs: domain 17 of 17, from 674 to 696: score 34.8, E = 2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F+++s+L +H+++H hh00495 674 YQCS-ECGRVFNQNSHLIQHQKVH 696 PF00096.16.ls: domain 17 of 17, from 674 to 696: score 36.8, E = 6.9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cg++F+++s+L +H+++H hh00495 674 YQCS-ECGRVFNQNSHLIQHQKVH 696 //