hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20090525/iprscan-20090525-16502914/chunk_1/iprscan-20090525-16502914.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh00495 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00355 460.6 7.9e-134 18 SM00349 52.4 6.1e-11 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00349 1/1 44 104 .. 1 62 [] 52.4 6.1e-11 SM00355 1/18 120 142 .. 1 23 [] 6.7 55 SM00355 2/18 226 248 .. 1 23 [] 22.3 0.07 SM00355 3/18 254 276 .. 1 23 [] 27.4 0.0019 SM00355 4/18 282 304 .. 1 23 [] 27.7 0.0016 SM00355 5/18 310 332 .. 1 23 [] 29.6 0.00042 SM00355 6/18 338 360 .. 1 23 [] 28.2 0.0012 SM00355 7/18 366 388 .. 1 23 [] 25.1 0.0096 SM00355 8/18 394 416 .. 1 23 [] 18.1 1.3 SM00355 9/18 422 444 .. 1 23 [] 29.9 0.00034 SM00355 10/18 450 472 .. 1 23 [] 26.9 0.0027 SM00355 11/18 478 500 .. 1 23 [] 22.8 0.05 SM00355 12/18 506 528 .. 1 23 [] 27.0 0.0026 SM00355 13/18 534 556 .. 1 23 [] 27.8 0.0015 SM00355 14/18 562 584 .. 1 23 [] 21.9 0.089 SM00355 15/18 590 612 .. 1 23 [] 30.1 0.00031 SM00355 16/18 618 640 .. 1 23 [] 27.5 0.0018 SM00355 17/18 646 668 .. 1 23 [] 30.5 0.00023 SM00355 18/18 674 696 .. 1 23 [] 31.0 0.00016 Alignments of top-scoring domains: SM00349: domain 1 of 1, from 44 to 104: score 52.4, E = 6.1e-11 *->VtFeDVAVdFsqEEWeqLDpaQrnLYRdVMlENYsnLvSLGgfqvsk + FeDVA+ FsqEEW+ L Qr L dVMlEN+ L S+G + +k hh00495 44 MVFEDVAIHFSQEEWGILNDVQRHLHSDVMLENFALLSSVGCWHGAK 90 pdliskLEqgeEpwi<-* ++ + + q ++ hh00495 91 DEEAPSK-QCVSVGV 104 SM00355: domain 1 of 18, from 120 to 142: score 6.7, E = 55 *->ykCpigCgksfssk.aLkrHmrvH<-* C+ C+ ++ +L +H +H hh00495 120 QPCET-CSSLLKDIlHLAEHDGTH 142 SM00355: domain 2 of 18, from 226 to 248: score 22.3, E = 0.07 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f++++ L +H+++H hh00495 226 YSCTQ-CGKDFCHQhTLFEHQKIH 248 SM00355: domain 3 of 18, from 254 to 276: score 27.4, E = 0.0019 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f+ ++L++H+r H hh00495 254 YECSE-CGKLFRYNsDLIKHQRNH 276 SM00355: domain 4 of 18, from 282 to 304: score 27.7, E = 0.0016 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk fs k + ++H+++H hh00495 282 YKCSE-CGKAFSLKyNVVQHQKIH 304 SM00355: domain 5 of 18, from 310 to 332: score 29.6, E = 0.00042 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f +k++L +H+r+H hh00495 310 YECSE-CGKAFLRKsHLLQHQRIH 332 SM00355: domain 6 of 18, from 338 to 360: score 28.2, E = 0.0012 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f ++ +L+ H+++H hh00495 338 YVCSE-CGKAFLTQaHLVGHQKIH 360 SM00355: domain 7 of 18, from 366 to 388: score 25.1, E = 0.0096 *->ykCpigCgksfssk.aLkrHmrvH<-* y C++ Cgk f +aL+rH++vH hh00495 366 YGCNE-CGKYFMYSsALIRHQKVH 388 SM00355: domain 8 of 18, from 394 to 416: score 18.1, E = 1.3 *->ykCpigCgksfssk.aLkrHmrvH<-* + C + Cgk f + L+ H+rvH hh00495 394 FYCCE-CGKFFMDScTLIIHQRVH 416 SM00355: domain 9 of 18, from 422 to 444: score 29.9, E = 0.00034 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f+ ++ L+rH++vH hh00495 422 YECNE-CGKFFRYRsTLIRHQKVH 444 SM00355: domain 10 of 18, from 450 to 472: score 26.9, E = 0.0027 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f + + L+ H+rvH hh00495 450 YECSE-CGKFFMDTsTLIIHQRVH 472 SM00355: domain 11 of 18, from 478 to 500: score 22.8, E = 0.05 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f+ L+rH+rvH hh00495 478 YECNK-CGKFFRYCfTLNRHQRVH 500 SM00355: domain 12 of 18, from 506 to 528: score 27.0, E = 0.0026 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f + Lk H+rvH hh00495 506 YECSE-CGKFFVDScTLKSHQRVH 528 SM00355: domain 13 of 18, from 534 to 556: score 27.8, E = 0.0015 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C+i Cgksf+ ++ L H+r+H hh00495 534 FECSI-CGKSFRCRsTLDTHQRIH 556 SM00355: domain 14 of 18, from 562 to 584: score 21.9, E = 0.089 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk f++ ++ +rH r H hh00495 562 YECSE-CGKFFRHNsNHIRHRRNH 584 SM00355: domain 15 of 18, from 590 to 612: score 30.1, E = 0.00031 *->ykCpigCgksfssk.aLkrHmrvH<-* ++C++ Cg++fs+ ++L+rH++vH hh00495 590 FECTE-CGRVFSQNsHLIRHQKVH 612 SM00355: domain 16 of 18, from 618 to 640: score 27.5, E = 0.0018 *->ykCpigCgksfssk.aLkrHmrvH<-* ykC++ Cgk f + + L+ H rvH hh00495 618 YKCSK-CGKFFMDSsTLISHERVH 640 SM00355: domain 17 of 18, from 646 to 668: score 30.5, E = 0.00023 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cgk+f+ ++L++H r+H hh00495 646 YECSE-CGKVFRYNsSLIKHRRIH 668 SM00355: domain 18 of 18, from 674 to 696: score 31.0, E = 0.00016 *->ykCpigCgksfssk.aLkrHmrvH<-* y+C++ Cg++f++ ++L++H++vH hh00495 674 YQCSE-CGRVFNQNsHLIQHQKVH 696 //