# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohh00532.fasta.nr -Q hh00532.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hh00532, 373 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6840918 sequences Expectation_n fit: rho(ln(x))= 5.4156+/-0.000187; mu= 9.3687+/- 0.010 mean_var=78.8465+/-15.359, 0's: 45 Z-trim: 58 B-trim: 78 in 1/65 Lambda= 0.144438 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087230|dbj|BAD92062.1| poly(rC)-binding prote ( 373) 2430 515.6 5.7e-144 gi|184186908|gb|ACC69194.1| poly(rC) binding prote ( 361) 2352 499.4 4.3e-139 gi|2500577|sp|Q61990|PCBP2_MOUSE Poly(rC)-binding ( 362) 2340 496.9 2.4e-138 gi|6707736|sp|Q15366|PCBP2_HUMAN Poly(rC)-binding ( 365) 2334 495.6 5.9e-138 gi|47940610|gb|AAH71942.1| Poly(rC) binding protei ( 366) 2322 493.1 3.3e-137 gi|126345443|ref|XP_001362482.1| PREDICTED: simila ( 351) 2273 482.9 3.8e-134 gi|73996213|ref|XP_857432.1| PREDICTED: similar to ( 467) 2270 482.4 7.3e-134 gi|73996219|ref|XP_857557.1| PREDICTED: similar to ( 360) 2169 461.3 1.3e-127 gi|109096944|ref|XP_001105618.1| PREDICTED: simila ( 358) 2083 443.3 3.2e-122 gi|109096946|ref|XP_001105758.1| PREDICTED: simila ( 355) 2002 426.4 3.8e-117 gi|49250542|gb|AAH74565.1| Poly(rC) binding protei ( 353) 1940 413.5 3e-113 gi|27370875|gb|AAH41241.1| Pcbp2b protein [Xenopus ( 353) 1935 412.5 6.1e-113 gi|5459450|emb|CAB50743.1| hnRNP-E2 protein [Xenop ( 353) 1932 411.9 9.4e-113 gi|73996209|ref|XP_857348.1| PREDICTED: similar to ( 327) 1926 410.6 2.1e-112 gi|54037961|gb|AAH84195.1| Pcbp2 protein [Xenopus ( 353) 1926 410.6 2.2e-112 gi|73996205|ref|XP_857271.1| PREDICTED: similar to ( 342) 1898 404.8 1.2e-110 gi|12230408|sp|O19048|PCBP1_RABIT Poly(rC)-binding ( 356) 1864 397.7 1.7e-108 gi|57093423|ref|XP_538537.1| PREDICTED: similar to ( 356) 1859 396.6 3.6e-108 gi|460771|emb|CAA55016.1| hnRNP-E1 [Homo sapiens] ( 356) 1859 396.6 3.6e-108 gi|73996229|ref|XP_857757.1| PREDICTED: similar to ( 323) 1842 393.1 3.9e-107 gi|74141926|dbj|BAE41029.1| unnamed protein produc ( 278) 1831 390.7 1.7e-106 gi|74007267|ref|XP_548937.2| PREDICTED: similar to ( 362) 1777 379.6 5.1e-103 gi|73996235|ref|XP_857871.1| PREDICTED: similar to ( 370) 1772 378.5 1.1e-102 gi|149036630|gb|EDL91248.1| similar to Pol(yrC)-bi ( 337) 1769 377.9 1.5e-102 gi|194384644|dbj|BAG59482.1| unnamed protein produ ( 301) 1746 373.0 3.9e-101 gi|73996211|ref|XP_857392.1| PREDICTED: similar to ( 301) 1746 373.0 3.9e-101 gi|126345445|ref|XP_001362564.1| PREDICTED: simila ( 338) 1734 370.6 2.4e-100 gi|74268197|gb|AAI03398.1| Poly(rC) binding protei ( 349) 1734 370.6 2.5e-100 gi|1360003|emb|CAA66619.1| nuclear poly(C)-binding ( 349) 1720 367.7 1.9e-99 gi|109659150|gb|AAI18167.1| Poly(rC) binding prote ( 361) 1701 363.7 3e-98 gi|109065037|ref|XP_001099433.1| PREDICTED: simila ( 393) 1701 363.8 3.2e-98 gi|119629731|gb|EAX09326.1| poly(rC) binding prote ( 393) 1701 363.8 3.2e-98 gi|194226343|ref|XP_001488421.2| PREDICTED: simila ( 361) 1695 362.5 7e-98 gi|56566054|gb|AAV98363.1| poly(rC) binding protei ( 361) 1694 362.3 8.1e-98 gi|444021|emb|CAA82631.1| sub2.3 [Homo sapiens] ( 299) 1563 334.9 1.2e-89 gi|134026176|gb|AAI35317.1| LOC733863 protein [Xen ( 475) 1528 327.8 2.6e-87 gi|73996237|ref|XP_857910.1| PREDICTED: similar to ( 348) 1476 316.8 3.7e-84 gi|90086375|dbj|BAE91740.1| unnamed protein produc ( 283) 1330 286.3 4.6e-75 gi|118086587|ref|XP_419049.2| PREDICTED: hypotheti ( 448) 1275 275.0 1.8e-71 gi|159569806|emb|CAP19489.1| novel protein similar ( 344) 1263 272.4 8.5e-71 gi|159569807|emb|CAP19490.1| novel protein similar ( 350) 1263 272.4 8.6e-71 gi|134025331|gb|AAI35089.1| Zgc:162999 protein [Da ( 350) 1257 271.2 2.1e-70 gi|148672030|gb|EDL03977.1| poly(rC) binding prote ( 316) 1256 271.0 2.2e-70 gi|73996223|ref|XP_857634.1| PREDICTED: similar to ( 304) 1251 269.9 4.4e-70 gi|149031922|gb|EDL86834.1| rCG50739, isoform CRA_ ( 317) 1249 269.5 6e-70 gi|119617117|gb|EAW96711.1| poly(rC) binding prote ( 318) 1246 268.9 9.3e-70 gi|495128|emb|CAA53546.1| mCBP [Mus musculus] ( 331) 1246 268.9 9.6e-70 gi|51491472|dbj|BAD36897.1| poly(rC) binding prote ( 331) 1246 268.9 9.6e-70 gi|73996221|ref|XP_857597.1| PREDICTED: similar to ( 337) 1246 268.9 9.8e-70 gi|118116443|ref|XP_423701.2| PREDICTED: similar t ( 193) 1242 267.9 1.1e-69 >>gi|62087230|dbj|BAD92062.1| poly(rC)-binding protein 2 (373 aa) initn: 2430 init1: 2430 opt: 2430 Z-score: 2740.0 bits: 515.6 E(): 5.7e-144 Smith-Waterman score: 2430; 100.000% identity (100.000% similar) in 373 aa overlap (1-373:1-373) 10 20 30 40 50 60 hh0053 PLKVQLPRTLLDMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 PLKVQLPRTLLDMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN 10 20 30 40 50 60 70 80 90 100 110 120 hh0053 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ 70 80 90 100 110 120 130 140 150 160 170 180 hh0053 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 130 140 150 160 170 180 190 200 210 220 230 240 hh0053 SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTI 190 200 210 220 230 240 250 260 270 280 290 300 hh0053 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHEL 250 260 270 280 290 300 310 320 330 340 350 360 hh0053 TIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 TIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 310 320 330 340 350 360 370 hh0053 VRLSSETGGMGSS ::::::::::::: gi|620 VRLSSETGGMGSS 370 >>gi|184186908|gb|ACC69194.1| poly(rC) binding protein 2 (361 aa) initn: 2352 init1: 2352 opt: 2352 Z-score: 2652.3 bits: 499.4 E(): 4.3e-139 Smith-Waterman score: 2352; 100.000% identity (100.000% similar) in 361 aa overlap (13-373:1-361) 10 20 30 40 50 60 hh0053 PLKVQLPRTLLDMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN :::::::::::::::::::::::::::::::::::::::::::::::: gi|184 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN 10 20 30 40 70 80 90 100 110 120 hh0053 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ 50 60 70 80 90 100 130 140 150 160 170 180 hh0053 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 110 120 130 140 150 160 190 200 210 220 230 240 hh0053 SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTI 170 180 190 200 210 220 250 260 270 280 290 300 hh0053 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHEL 230 240 250 260 270 280 310 320 330 340 350 360 hh0053 TIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|184 TIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 290 300 310 320 330 340 370 hh0053 VRLSSETGGMGSS ::::::::::::: gi|184 VRLSSETGGMGSS 350 360 >>gi|2500577|sp|Q61990|PCBP2_MOUSE Poly(rC)-binding prot (362 aa) initn: 2338 init1: 1819 opt: 2340 Z-score: 2638.8 bits: 496.9 E(): 2.4e-138 Smith-Waterman score: 2340; 99.724% identity (99.724% similar) in 362 aa overlap (13-373:1-362) 10 20 30 40 50 60 hh0053 PLKVQLPRTLLDMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN :::::::::::::::::::::::::::::::::::::::::::::::: gi|250 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN 10 20 30 40 70 80 90 100 110 120 hh0053 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ 50 60 70 80 90 100 130 140 150 160 170 180 hh0053 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 110 120 130 140 150 160 190 200 210 220 230 240 hh0053 SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTI 170 180 190 200 210 220 250 260 270 280 290 hh0053 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQTTSHE ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|250 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHE 230 240 250 260 270 280 300 310 320 330 340 350 hh0053 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|250 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 290 300 310 320 330 340 360 370 hh0053 NVRLSSETGGMGSS :::::::::::::: gi|250 NVRLSSETGGMGSS 350 360 >>gi|6707736|sp|Q15366|PCBP2_HUMAN Poly(rC)-binding prot (365 aa) initn: 1288 init1: 1288 opt: 2334 Z-score: 2632.0 bits: 495.6 E(): 5.9e-138 Smith-Waterman score: 2334; 98.904% identity (98.904% similar) in 365 aa overlap (13-373:1-365) 10 20 30 40 50 60 hh0053 PLKVQLPRTLLDMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN :::::::::::::::::::::::::::::::::::::::::::::::: gi|670 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN 10 20 30 40 70 80 90 100 110 120 hh0053 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|670 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ 50 60 70 80 90 100 130 140 150 160 170 180 hh0053 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|670 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 110 120 130 140 150 160 190 200 210 220 230 hh0053 ----SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|670 TLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLE 170 180 190 200 210 220 240 250 260 270 280 290 hh0053 AYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|670 AYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTT 230 240 250 260 270 280 300 310 320 330 340 350 hh0053 SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|670 SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQ 290 300 310 320 330 340 360 370 hh0053 YLINVRLSSETGGMGSS ::::::::::::::::: gi|670 YLINVRLSSETGGMGSS 350 360 >>gi|47940610|gb|AAH71942.1| Poly(rC) binding protein 2 (366 aa) initn: 1711 init1: 1068 opt: 2322 Z-score: 2618.4 bits: 493.1 E(): 3.3e-137 Smith-Waterman score: 2322; 98.634% identity (98.634% similar) in 366 aa overlap (13-373:1-366) 10 20 30 40 50 60 hh0053 PLKVQLPRTLLDMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN :::::::::::::::::::::::::::::::::::::::::::::::: gi|479 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN 10 20 30 40 70 80 90 100 110 120 hh0053 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|479 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ 50 60 70 80 90 100 130 140 150 160 170 180 hh0053 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|479 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 110 120 130 140 150 160 190 200 210 220 230 hh0053 ----SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|479 TLSQSPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLE 170 180 190 200 210 220 240 250 260 270 280 290 hh0053 AYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQT ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: gi|479 AYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQT 230 240 250 260 270 280 300 310 320 330 340 350 hh0053 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|479 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLA 290 300 310 320 330 340 360 370 hh0053 QYLINVRLSSETGGMGSS :::::::::::::::::: gi|479 QYLINVRLSSETGGMGSS 350 360 >>gi|126345443|ref|XP_001362482.1| PREDICTED: similar to (351 aa) initn: 2271 init1: 1819 opt: 2273 Z-score: 2563.5 bits: 482.9 E(): 3.8e-134 Smith-Waterman score: 2273; 99.715% identity (99.715% similar) in 351 aa overlap (13-362:1-351) 10 20 30 40 50 60 hh0053 PLKVQLPRTLLDMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN :::::::::::::::::::::::::::::::::::::::::::::::: gi|126 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN 10 20 30 40 70 80 90 100 110 120 hh0053 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ 50 60 70 80 90 100 130 140 150 160 170 180 hh0053 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 110 120 130 140 150 160 190 200 210 220 230 240 hh0053 SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTI 170 180 190 200 210 220 250 260 270 280 290 hh0053 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQTTSHE ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|126 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHE 230 240 250 260 270 280 300 310 320 330 340 350 hh0053 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 290 300 310 320 330 340 360 370 hh0053 NVRLSSETGGMGSS ::: gi|126 NVR 350 >>gi|73996213|ref|XP_857432.1| PREDICTED: similar to Pol (467 aa) initn: 2268 init1: 1819 opt: 2270 Z-score: 2558.4 bits: 482.4 E(): 7.3e-134 Smith-Waterman score: 2270; 99.432% identity (99.432% similar) in 352 aa overlap (13-363:1-352) 10 20 30 40 50 60 hh0053 PLKVQLPRTLLDMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN :::::::::::::::::::::::::::::::::::::::::::::::: gi|739 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN 10 20 30 40 70 80 90 100 110 120 hh0053 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ 50 60 70 80 90 100 130 140 150 160 170 180 hh0053 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 110 120 130 140 150 160 190 200 210 220 230 240 hh0053 SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTI 170 180 190 200 210 220 250 260 270 280 290 hh0053 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQTTSHE ::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::: gi|739 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHE 230 240 250 260 270 280 300 310 320 330 340 350 hh0053 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLI 290 300 310 320 330 340 360 370 hh0053 NVRLSSETGGMGSS :: : gi|739 NVSLENAKPSSQAASVTIPDHLSINLSQPSTPSSSSSSSTTTPSLATAGTSDAPSSLPNP 350 360 370 380 390 400 >>gi|73996219|ref|XP_857557.1| PREDICTED: similar to Pol (360 aa) initn: 2309 init1: 1245 opt: 2169 Z-score: 2446.2 bits: 461.3 E(): 1.3e-127 Smith-Waterman score: 2169; 93.478% identity (94.837% similar) in 368 aa overlap (13-373:1-360) 10 20 30 40 50 60 hh0053 PLKVQLPRTLLDMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN :::::::::::::::::::::::::::::::::::::::::::::::: gi|739 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN 10 20 30 40 70 80 90 100 110 120 hh0053 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ 50 60 70 80 90 100 130 140 150 160 170 180 hh0053 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 110 120 130 140 150 160 190 200 210 220 230 240 hh0053 SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTI ::::::::::::::::::::::::: : .:::::::::::::::::::::::: gi|739 SPPKGVTIPYRPKPSSSPVIFAGGQVR--------NFPHTTPSMCLNPDLEGPPLEAYTI 170 180 190 200 210 220 250 260 270 280 290 hh0053 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESS---SPEV---KGYW-GLDASA :::::::::::::::::::::::::::::::::::...: : :. :: :::::: gi|739 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGMDTSVFISQEILSSKGEQSGLDASA 230 240 250 260 270 280 300 310 320 330 340 350 hh0053 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|739 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASIS 290 300 310 320 330 340 360 370 hh0053 LAQYLINVRLSSETGGMGSS :::::::::::::::::::: gi|739 LAQYLINVRLSSETGGMGSS 350 360 >>gi|109096944|ref|XP_001105618.1| PREDICTED: similar to (358 aa) initn: 2214 init1: 1051 opt: 2083 Z-score: 2349.4 bits: 443.3 E(): 3.2e-122 Smith-Waterman score: 2083; 91.530% identity (92.896% similar) in 366 aa overlap (13-373:1-358) 10 20 30 40 50 60 hh0053 PLKVQLPRTLLDMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN :::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN 10 20 30 40 70 80 90 100 110 120 hh0053 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ ::::::::::::::::::::::::::::::::: .::::::::::::::::::::::::: gi|109 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEVFSSSMTNSTAASRPPVTLRLVVPASQ 50 60 70 80 90 100 130 140 150 160 170 180 hh0053 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 110 120 130 140 150 160 190 200 210 220 230 hh0053 ----SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLE ::::::::::::::::::::::::: .. ::: .: :. : : gi|109 TLSQSPPKGVTIPYRPKPSSSPVIFAGGQGQF--GSDCIREIPSTASIS------GLPHS 170 180 190 200 210 220 240 250 260 270 280 290 hh0053 AYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQT ::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::: gi|109 AYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQT 230 240 250 260 270 280 300 310 320 330 340 350 hh0053 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLA 290 300 310 320 330 340 360 370 hh0053 QYLINVRLSSETGGMGSS :::::::::::::::::: gi|109 QYLINVRLSSETGGMGSS 350 >>gi|109096946|ref|XP_001105758.1| PREDICTED: similar to (355 aa) initn: 2104 init1: 1219 opt: 2002 Z-score: 2258.3 bits: 426.4 E(): 3.8e-117 Smith-Waterman score: 2002; 88.705% identity (91.460% similar) in 363 aa overlap (13-373:1-355) 10 20 30 40 50 60 hh0053 PLKVQLPRTLLDMDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN :::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARIN 10 20 30 40 70 80 90 100 110 120 hh0053 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQ :::::::::::::::::::::::::::::::::. .::::::::::::::::::::::: gi|109 ISEGNCPERIITLAGPTNAIFKAFAMIIDKLEESWCNSMTNSTAASRPPVTLRLVVPASQ 50 60 70 80 90 100 130 140 150 160 170 180 hh0053 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 CGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 110 120 130 140 150 160 190 200 210 220 230 240 hh0053 SPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTI ::::::::::::::::::::::::: : :.: : : .: :::: gi|109 SPPKGVTIPYRPKPSSSPVIFAGGQVRKFLLMASTSPPLLLPLHSQTP--------AYTI 170 180 190 200 210 220 250 260 270 280 290 hh0053 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW--GLDASAQTTSH :::::::::::::::::::::::::::::::::::...:. .: . ::::::::::: gi|109 QGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGMHTSDETTKLIFTSGLDASAQTTSH 230 240 250 260 270 280 300 310 320 330 340 350 hh0053 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYL 290 300 310 320 330 340 360 370 hh0053 INVRLSSETGGMGSS ::::::::::::::: gi|109 INVRLSSETGGMGSS 350 373 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 05:17:43 2008 done: Tue Aug 12 05:20:13 2008 Total Scan time: 804.690 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]