hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-05201490/chunk_1/iprscan-20080812-05201490.nocrc
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Query sequence: hh00532
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00013.19.ls KH domain                                      226.7    4.7e-65   3
PF00013.19.fs KH domain                                      221.2    2.2e-63   3
PF07650.7.fs KH domain                                       28.8    2.5e-07   3
PF07650.7.ls KH domain                                       20.2    0.00044   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00013.19.fs   1/3      27    87 ..     1    73 []    69.1  8.9e-19
PF00013.19.ls   1/3      27    87 ..     1    73 []    71.0  3.6e-18
PF07650.7.ls   1/3      27    75 ..     1    78 []    18.0   0.0008
PF00013.19.fs   2/3     111   174 ..     1    73 []    75.6  1.3e-20
PF00013.19.ls   2/3     111   174 ..     1    73 []    77.5  3.8e-20
PF00013.19.ls   3/3     297   359 ..     1    73 []    78.2  2.4e-20
PF00013.19.fs   3/3     297   359 ..     1    73 []    76.4  8.2e-21

Alignments of top-scoring domains:
PF00013.19.fs: domain 1 of 3, from 27 to 87: score 69.1, E = 8.9e-19
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      tir+l + + vG+iIGk+G+ +k++ree+Ga+I+i++ +        
     hh00532    27    TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-------- 65   

                   plngsgertvtIsGtpeavekAkkli<-*
                       ++er++t+ G++ a+ kA ++i   
     hh00532    66 ----CPERIITLAGPTNAIFKAFAMI    87   

PF00013.19.ls: domain 1 of 3, from 27 to 87: score 71.0, E = 3.6e-18
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      tir+l + + vG+iIGk+G+ +k++ree+Ga+I+i++ +        
     hh00532    27    TIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-------- 65   

                   plngsgertvtIsGtpeavekAkkli<-*
                       ++er++t+ G++ a+ kA ++i   
     hh00532    66 ----CPERIITLAGPTNAIFKAFAMI    87   

PF07650.7.ls: domain 1 of 3, from 27 to 75: score 18.0, E = 0.0008
                   *->avivvirtsqpGivIGKgGsnIkklgkelrklltgkkvqieviEySd
                       +++  +    G +IGK+G+ +kk ++e + +       i++ E   
     hh00532    27    TIRLLMHGKEVGSIIGKKGESVKKMREESGAR-------INISE--- 63   

                   eeFgkkVfLeLwVKVkknWvknpellaqLga<-*
                                       + pe   +L+    
     hh00532    64 -------------------GNCPERIITLAG    75   

PF00013.19.fs: domain 2 of 3, from 111 to 174: score 75.6, E = 1.3e-20
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      t+r+++p+s++G++IGkgG +IkeIre tGa++++ +d         
     hh00532   111    TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-------L 150  

                   plngsgertvtIsGtpeavekAkkli<-*
                   p  +s+er +tI G p+++ ++ k+i   
     hh00532   151 P--NSTERAITIAGIPQSIIECVKQI    174  

PF00013.19.ls: domain 2 of 3, from 111 to 174: score 77.5, E = 3.8e-20
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      t+r+++p+s++G++IGkgG +IkeIre tGa++++ +d         
     hh00532   111    TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-------L 150  

                   plngsgertvtIsGtpeavekAkkli<-*
                   p  +s+er +tI G p+++ ++ k+i   
     hh00532   151 P--NSTERAITIAGIPQSIIECVKQI    174  

PF00013.19.ls: domain 3 of 3, from 297 to 359: score 78.2, E = 2.4e-20
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      + +++ip++++G+iIG++G++I+eIr+ +Ga+I+i ++         
     hh00532   297    SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-------- 335  

                   plngsgertvtIsGtpeavekAkkli<-*
                      gs++r vtI+G+ +++  A++li   
     hh00532   336 E--GSTDRQVTITGSAASISLAQYLI    359  

PF00013.19.fs: domain 3 of 3, from 297 to 359: score 76.4, E = 8.2e-21
                   *->tirilipsskvGriIGkgGstIkeIreetGakIdipddgesknlped
                      + +++ip++++G+iIG++G++I+eIr+ +Ga+I+i ++         
     hh00532   297    SHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV-------- 335  

                   plngsgertvtIsGtpeavekAkkli<-*
                      gs++r vtI+G+ +++  A++li   
     hh00532   336 E--GSTDRQVTITGSAASISLAQYLI    359  

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