hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-05201490/chunk_1/iprscan-20080812-05201490.nocrc
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Query sequence: hh00532
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00322                                                 186.2    3.1e-51   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00322    1/3      24    92 ..     1    63 []    64.9    1e-14
SM00322    2/3     108   179 ..     1    63 []    56.2  4.2e-12
SM00322    3/3     294   364 ..     1    63 []    65.1    9e-15

Alignments of top-scoring domains:
SM00322: domain 1 of 3, from 24 to 92: score 64.9, E = 1e-14
                   *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg....ert
                       + ti++  + + vG+iIGk+G+ +kk +ee+g++I+i++++ +er+
     hh00532    24    VtLTIRLlMHGKEVGSIIGKKGESVKKMREESGARINISEgncpERI 70   

                   vtItGppenvekAkelileile<-*
                   +t+ Gp  ++ kA ++i ++le   
     hh00532    71 ITLAGPTNAIFKAFAMIIDKLE    92   

SM00322: domain 2 of 3, from 108 to 179: score 56.2, E = 4.2e-12
                   *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg.......
                       +vt+++ +pa+++G++IGkgG  Ik+i+e tg+++++ g+  ++++
     hh00532   108    PpVTLRLvVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGdmlpnst 154  

                   ertvtItGppenvekAkelileile<-*
                   er +tI G p+ + +++++i+ ++    
     hh00532   155 ERAITIAGIPQSIIECVKQICVVML    179  

SM00322: domain 3 of 3, from 294 to 364: score 65.1, E = 9e-15
                   *->a.vtiev.ipadkvGriIGkgGstIkkieeetgvkIdipg......e
                       ++++e++ip+d++G iIG++G+ I++i++++g++I+i ++ +++++
     hh00532   294    QtTSHELtIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANpvegstD 340  

                   rtvtItGppenvekAkelileile<-*
                   r vtItG+ + + +A++li  +l+   
     hh00532   341 RQVTITGSAASISLAQYLINVRLS    364  

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