hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-05254355/chunk_1/iprscan-20080812-05254355.nocrc
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Query sequence: hh00615
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 241.7    6.2e-68   1
SM00219                                                  19.8    2.3e-12   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1      22   308 ..     1   280 []    19.8  2.3e-12
SM00220    1/1      22   308 ..     1   231 []   241.7  6.2e-68

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 22 to 308: score 19.8, E = 2.3e-12
                   *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda....keeFlrE
                       ++ + LG G FG V++ + ++ +++ A+K+++ + +++++e  ++E
     hh00615    22    WEMRERLGTGGFGNVCLYQHReldLKIAIKSCRLELstknRERWCHE 68   

                   akiMkklGgkHpNiVkLlGvcteegrr.FmevePlmivmEymegGdLldy
                   ++iMkkl  +H N+Vk   +c  +++ + +  + +++ mEy++gGdL++ 
     hh00615    69 IQIMKKL--NHANVVK---ACDVPEELnILIHDVPLLAMEYCSGGDLRKL 113  

                   Lrknrpk....lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvge
                   L  n+p++  +l+ s+ ls   +I +G +YL++++++HRDL   N+ + +
     hh00615   114 L--NKPEnccgLKESQILSLLSDIGSGIRYLHENKIIHRDLKPENIVLQD 161  

                   nk...vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAP
                    +++ + KI D G ++d++ +       +  ++       ++  +  +AP
     hh00615   162 VGgkiIHKIIDLGYAKDVDQG-------SLCTS-------FVGTLQYLAP 197  

                   EslkdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylk
                   E +  + +t   D WSFG + +E    G  P        + ++  +e++k
     hh00615   198 ELFENKPYTATVDYWSFGTMVFECIA-GYRPFLHH----LQPFTWHEKIK 242  

                   kGyRlpkPendlp.iS................s..vtCPdelYdlMlqCW
                   k +   + +   +++S++ + +++ +++++  s  v+  +   +lMl   
     hh00615   243 KKDPKCIFAC--EeMSgevrfsshlpqpnslcSlvVEPMENWLQLML--- 287  

                   aedPedRPtFsel....verl<-*
                   + dP +R    +l+ ++ +++   
     hh00615   288 NWDPQQRGGPVDLtlkqPRCF    308  

SM00220: domain 1 of 1, from 22 to 308: score 241.7, E = 6.2e-68
                   *->YellkklGkGaFGkVylardkktgrlvAiKvik........erilrE
                      +e+ + lG G+FG V+l ++++ + + AiK  + + +++++er + E
     hh00615    22    WEMRERLGTGGFGNVCLYQHRELDLKIAIKSCRlelstknrERWCHE 68   

                   ikiLkk.dHPNIVkLydvfed......dklylVmEyceGdlGdLfdllkk
                   i+i+kk +H N+Vk  dv e+ +   +d   l mEyc+G  GdL++ll k
     hh00615    69 IQIMKKlNHANVVKACDVPEElnilihDVPLLAMEYCSG--GDLRKLLNK 116  

                   rgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..
                         +++l E+++ +++  i s++ YLH+++IiHRDLKPeNi L + +
     hh00615   117 PEN---CCGLKEsQILSLLSDIGSGIRYLHENKIIHRDLKPENIVLQDvg 163  

                   ...hvKlaDFGlArql......ttfvGTpeYmAPEvl...gYgkpavDiW
                   ++   K++D G A+ +++++  t+fvGT+ Y+APE++++++Y+   vD W
     hh00615   164 gkiIHKIIDLGYAKDVdqgslcTSFVGTLQYLAPELFenkPYTA-TVDYW 212  

                   SlGcilyElltGkpPFp...qldlifkkig....................
                   S+G +++E+++G+ PF ++ q+++  +ki++++++     ++ +++ + +
     hh00615   213 SFGTMVFECIAGYRPFLhhlQPFTWHEKIKkkdpkcifaceemsgevrfs 262  

                   .............SpeakdLikklLvkdPekRlta.eaLedeldikaHPf
                   ++ + +++  +   +++ + ++ +L++dP++R +  ++       k+   
     hh00615   263 shlpqpnslcslvVEPMENWLQLMLNWDPQQRGGPvDLTL-----KQPRC 307  

                   f<-*
                   f   
     hh00615   308 F    308  

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