hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-05312971/chunk_1/iprscan-20080812-05312971.nocrc
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Query sequence: hh00720
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     78.9    2.3e-21   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     80.8    3.8e-21   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/1     160   229 ..     1    74 []    78.9  2.3e-21
PF00076.12.ls   1/1     160   229 ..     1    74 []    80.8  3.8e-21

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 1, from 160 to 229: score 78.9, E = 2.3e-21
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V+N+p+   + dL+++F++fG+i++++i+     +   skGf+FV
     hh00720   160    LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF----NERGSKGFGFV 202  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe++ dA++A ++l+G+ ++gr+++v   
     hh00720   203 TFENSADADRAREKLHGTVVEGRKIEV    229  

PF00076.12.ls: domain 1 of 1, from 160 to 229: score 80.8, E = 3.8e-21
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V+N+p+   + dL+++F++fG+i++++i+     +   skGf+FV
     hh00720   160    LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF----NERGSKGFGFV 202  

                   eFedeedAekAldalnGkelggrelrv<-*
                   +Fe++ dA++A ++l+G+ ++gr+++v   
     hh00720   203 TFENSADADRAREKLHGTVVEGRKIEV    229  

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