hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-05375539/chunk_1/iprscan-20080812-05375539.nocrc
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Query sequence: hh00788
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00622.18.fs SPRY domain                                    109.3    8.5e-31   1
PF00622.18.ls SPRY domain                                    111.1    2.9e-30   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00622.18.fs   1/1     229   354 .]     1   154 []   109.3  8.5e-31
PF00622.18.ls   1/1     229   354 .]     1   154 []   111.1  2.9e-30

Alignments of top-scoring domains:
PF00622.18.fs: domain 1 of 1, from 229 to 354: score 109.3, E = 8.5e-31
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger
                      sGk+Y+EVev ++++    w+vG++++s+            rkg++ 
     hh00788   229    SGKWYWEVEVAKKTK----WTVGVVRESI-----------IRKGSCP 260  

                   llGddegswgydgsggkkyhagesgepyglpfqekgdviGcflDyeagVt
                   l+++  g+w +++++++   a    + ++l+++   d +G++lDye+g  
     hh00788   261 LTPEQ-GFWLLRLRNQTDLKALDL-PSFSLTLTNNLDKVGIYLDYEGG-Q 307  

                   isFtkNGkyLgdsEshiyaFrnvtfdkkpggpLyPavslgsadgggeair
                   +sF+++ +       hiy+F+  tf     ++LyP+++   +dgg ++ +
     hh00788   308 LSFYNAKTM-----THIYTFS-NTFM----EKLYPYFCPCLNDGGENKEP 347  

                   lnfgqlp<-*
                   l +  +    
     hh00788   348 LHILHPQ    354  

PF00622.18.ls: domain 1 of 1, from 229 to 354: score 111.1, E = 2.9e-30
                   *->sGkhYfEVevdtgggepthwrvGwatksvhlppgfdlrsskrkgger
                      sGk+Y+EVev ++++    w+vG++++s+            rkg++ 
     hh00788   229    SGKWYWEVEVAKKTK----WTVGVVRESI-----------IRKGSCP 260  

                   llGddegswgydgsggkkyhagesgepyglpfqekgdviGcflDyeagVt
                   l+++  g+w +++++++   a    + ++l+++   d +G++lDye+g  
     hh00788   261 LTPEQ-GFWLLRLRNQTDLKALDL-PSFSLTLTNNLDKVGIYLDYEGG-Q 307  

                   isFtkNGkyLgdsEshiyaFrnvtfdkkpggpLyPavslgsadgggeair
                   +sF+++ +       hiy+F+  tf     ++LyP+++   +dgg ++ +
     hh00788   308 LSFYNAKTM-----THIYTFS-NTFM----EKLYPYFCPCLNDGGENKEP 347  

                   lnfgqlp<-*
                   l +  +    
     hh00788   348 LHILHPQ    354  

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