hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-05375539/chunk_1/iprscan-20080812-05375539.nocrc
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Query sequence: hh00788
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00449                                                 101.3    1.1e-25   1
SM00589                                                  76.5    3.3e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00589    1/1     176   228 ..     1    56 []    76.5  3.3e-18
SM00449    1/1     229   354 .]     1   145 []   101.3  1.1e-25

Alignments of top-scoring domains:
SM00589: domain 1 of 1, from 176 to 228: score 76.5, E = 3.3e-18
                   *->avdvtLDPdTAhpkLlLSeDrrsVrygdtkqkGsnlpdnPeRFdsyp
                      + ++tLDP TAhp+L+LS  ++sV +gd k     +pd PeRFds +
     hh00788   176    LSPLTLDPKTAHPNLVLSKSQTSVWHGDIKK---IMPDDPERFDSSV 219  

                   cVLGsegFs<-*
                    VLGs+gF+   
     hh00788   220 AVLGSRGFT    228  

SM00449: domain 1 of 1, from 229 to 354: score 101.3, E = 1.1e-25
                   *->sGkhYfEVevdtggdkghwrvGvatksvhlypfkvrrkrkggvsllG
                      sGk+Y+EVev +   k++w+vGv+++s+          rkg   l +
     hh00788   229    SGKWYWEVEVAK---KTKWTVGVVRESI---------IRKGSCPLTP 263  

                   edkgSwgyrgdggkkyhasefgeeyglpfqepgDviGcflDleaggStis
                   e  g+w +r+++ +   a    + ++l+++   D++G++lD+e g   +s
     hh00788   264 EQ-GFWLLRLRNQTDLKALDL-PSFSLTLTNNLDKVGIYLDYEGG--QLS 309  

                   FykNGkyLgdshilaffdvtfsgpLyPavslgstdgGgesvrlnfGp.p<
                   Fy++ + ++    +++f+ tf ++LyP++++   dgG ++ +l +  ++ 
     hh00788   310 FYNAKTMTH----IYTFSNTFMEKLYPYFCPCLNDGGENKEPLHILHpQ  354  

                   -*
                     
     hh00788     -    -    

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