# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohh00902.fasta.nr -Q hh00902.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hh00902, 104 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842563 sequences Expectation_n fit: rho(ln(x))= 5.2462+/-0.000182; mu= 5.2104+/- 0.010 mean_var=66.2276+/-12.736, 0's: 39 Z-trim: 39 B-trim: 2 in 1/65 Lambda= 0.157600 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087638|dbj|BAD92266.1| beta-synuclein variant ( 104) 729 173.3 5.2e-42 gi|114603552|ref|XP_001136653.1| PREDICTED: simila ( 120) 215 56.4 8.8e-07 gi|114603548|ref|XP_001136812.1| PREDICTED: beta-s ( 134) 211 55.5 1.8e-06 gi|109079852|ref|XP_001085146.1| PREDICTED: synucl ( 120) 210 55.3 1.9e-06 gi|55846688|gb|AAV67348.1| synuclein beta [Macaca ( 132) 210 55.3 2.1e-06 gi|2501105|sp|Q16143|SYUB_HUMAN Beta-synuclein ( 134) 210 55.3 2.1e-06 gi|73953305|ref|XP_852568.1| PREDICTED: similar to ( 134) 204 54.0 5.5e-06 gi|81879780|sp|Q91ZZ3|SYUB_MOUSE Beta-synuclein ( 133) 199 52.8 1.2e-05 gi|56269649|gb|AAH87579.1| Synuclein, beta [Rattus ( 134) 199 52.8 1.2e-05 gi|2501106|sp|Q63754|SYUB_RAT Beta-synuclein (Phos ( 137) 199 52.8 1.2e-05 gi|109658365|gb|AAI18379.1| Synuclein, beta [Bos t ( 134) 193 51.5 3.1e-05 gi|464424|sp|P33567|SYUB_BOVIN Beta-synuclein (Pho ( 134) 193 51.5 3.1e-05 gi|144227406|gb|ABO93463.1| beta-synuclein [Sus sc ( 133) 186 49.9 9.3e-05 gi|148709214|gb|EDL41160.1| synuclein, beta, isofo ( 133) 183 49.2 0.00015 gi|149039913|gb|EDL94029.1| synuclein, beta, isofo ( 134) 183 49.2 0.00015 gi|169656450|gb|ACA62933.1| beta-synuclein [Sus sc ( 93) 179 48.2 0.00021 gi|7689264|gb|AAF67730.1|AF253514_1 beta-synuclein ( 133) 172 46.7 0.00084 gi|126291567|ref|XP_001380939.1| PREDICTED: hypoth ( 88) 160 43.8 0.004 gi|49114910|gb|AAH72782.1| MGC80089 protein [Xenop ( 133) 160 43.9 0.0056 >>gi|62087638|dbj|BAD92266.1| beta-synuclein variant [Ho (104 aa) initn: 729 init1: 729 opt: 729 Z-score: 909.5 bits: 173.3 E(): 5.2e-42 Smith-Waterman score: 729; 100.000% identity (100.000% similar) in 104 aa overlap (1-104:1-104) 10 20 30 40 50 60 hh0090 ITELEIILALPTHPSLPHSNPPKAYHCGNLGGILAVLTSPDLFCPQPEEVAQEAAEEPLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 ITELEIILALPTHPSLPHSNPPKAYHCGNLGGILAVLTSPDLFCPQPEEVAQEAAEEPLI 10 20 30 40 50 60 70 80 90 100 hh0090 EPLMEPEGESYEDPPQVRGQQGWAGLWESRMIAAVPSWGGTSLA :::::::::::::::::::::::::::::::::::::::::::: gi|620 EPLMEPEGESYEDPPQVRGQQGWAGLWESRMIAAVPSWGGTSLA 70 80 90 100 >>gi|114603552|ref|XP_001136653.1| PREDICTED: similar to (120 aa) initn: 207 init1: 207 opt: 215 Z-score: 276.9 bits: 56.4 E(): 8.8e-07 Smith-Waterman score: 215; 47.368% identity (69.737% similar) in 76 aa overlap (7-81:40-115) 10 20 30 hh0090 ITELEIILALPTHPSLPHSNPPKAYHCGNLGGILAV ..: :. . : . . ::... .. gi|114 MAKEGVVAAAEKTKQGVTEAAEKTKEGVLYVVAEKTKEQASHLGGAVFFGAGNIAAATGL 10 20 30 40 50 60 40 50 60 70 80 90 hh0090 LTSPDLFCP-QPEEVAQEAAEEPLIEPLMEPEGESYEDPPQVRGQQGWAGLWESRMIAAV . .. .:::::::::::::::::::::::::::::: . :. gi|114 VKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPEA 70 80 90 100 110 120 100 hh0090 PSWGGTSLA >>gi|114603548|ref|XP_001136812.1| PREDICTED: beta-synuc (134 aa) initn: 207 init1: 207 opt: 211 Z-score: 271.3 bits: 55.5 E(): 1.8e-06 Smith-Waterman score: 211; 48.000% identity (69.333% similar) in 75 aa overlap (8-81:55-129) 10 20 30 hh0090 ITELEIILALPTHPSLPHSNPPKAYHCGNLGGILAVL .: :. . : . . ::... ... gi|114 GVTEAAEKTKEGVLYVGSKTREGVVQGVASVAEKTKEQASHLGGAVFFGAGNIAAATGLV 30 40 50 60 70 80 40 50 60 70 80 90 hh0090 TSPDLFCP-QPEEVAQEAAEEPLIEPLMEPEGESYEDPPQVRGQQGWAGLWESRMIAAVP .. .:::::::::::::::::::::::::::::: . :. gi|114 KREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPPQEEYQEYEPEA 90 100 110 120 130 100 hh0090 SWGGTSLA >>gi|109079852|ref|XP_001085146.1| PREDICTED: synuclein, (120 aa) initn: 207 init1: 207 opt: 210 Z-score: 270.8 bits: 55.3 E(): 1.9e-06 Smith-Waterman score: 210; 86.111% identity (94.444% similar) in 36 aa overlap (46-81:80-115) 20 30 40 50 60 70 hh0090 LPHSNPPKAYHCGNLGGILAVLTSPDLFCPQPEEVAQEAAEEPLIEPLMEPEGESYEDPP .::::::::::::::::::::::::::::: gi|109 SHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPP 50 60 70 80 90 100 80 90 100 hh0090 QVRGQQGWAGLWESRMIAAVPSWGGTSLA : . :. gi|109 QEEYQEYEPEA 110 120 >>gi|55846688|gb|AAV67348.1| synuclein beta [Macaca fasc (132 aa) initn: 207 init1: 207 opt: 210 Z-score: 270.2 bits: 55.3 E(): 2.1e-06 Smith-Waterman score: 210; 86.111% identity (94.444% similar) in 36 aa overlap (46-81:94-129) 20 30 40 50 60 70 hh0090 LPHSNPPKAYHCGNLGGILAVLTSPDLFCPQPEEVAQEAAEEPLIEPLMEPEGESYEDPP .::::::::::::::::::::::::::::: gi|558 SHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPP 70 80 90 100 110 120 80 90 100 hh0090 QVRGQQGWAGLWESRMIAAVPSWGGTSLA : . :. gi|558 QEEYQEYEP 130 >>gi|2501105|sp|Q16143|SYUB_HUMAN Beta-synuclein gi| (134 aa) initn: 207 init1: 207 opt: 210 Z-score: 270.1 bits: 55.3 E(): 2.1e-06 Smith-Waterman score: 210; 86.111% identity (94.444% similar) in 36 aa overlap (46-81:94-129) 20 30 40 50 60 70 hh0090 LPHSNPPKAYHCGNLGGILAVLTSPDLFCPQPEEVAQEAAEEPLIEPLMEPEGESYEDPP .::::::::::::::::::::::::::::: gi|250 SHLGGAVFSGAGNIAAATGLVKREEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDPP 70 80 90 100 110 120 80 90 100 hh0090 QVRGQQGWAGLWESRMIAAVPSWGGTSLA : . :. gi|250 QEEYQEYEPEA 130 >>gi|73953305|ref|XP_852568.1| PREDICTED: similar to syn (134 aa) initn: 201 init1: 201 opt: 204 Z-score: 262.7 bits: 54.0 E(): 5.5e-06 Smith-Waterman score: 204; 83.333% identity (94.444% similar) in 36 aa overlap (46-81:94-129) 20 30 40 50 60 70 hh0090 LPHSNPPKAYHCGNLGGILAVLTSPDLFCPQPEEVAQEAAEEPLIEPLMEPEGESYEDPP .::::::::::::::::::::::::::.:: gi|739 SHLGGAVFSGAGNIAAATGLVKKEEFPADLKPEEVAQEAAEEPLIEPLMEPEGESYEEPP 70 80 90 100 110 120 80 90 100 hh0090 QVRGQQGWAGLWESRMIAAVPSWGGTSLA : . :. gi|739 QEEYQEYEPEA 130 >>gi|81879780|sp|Q91ZZ3|SYUB_MOUSE Beta-synuclein gi (133 aa) initn: 196 init1: 196 opt: 199 Z-score: 256.6 bits: 52.8 E(): 1.2e-05 Smith-Waterman score: 199; 83.333% identity (91.667% similar) in 36 aa overlap (46-81:93-128) 20 30 40 50 60 70 hh0090 LPHSNPPKAYHCGNLGGILAVLTSPDLFCPQPEEVAQEAAEEPLIEPLMEPEGESYEDPP .::::::::::::::::::::::::::: : gi|818 SHLGGAVFSGAGNIAAATGLVKKEEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDSP 70 80 90 100 110 120 80 90 100 hh0090 QVRGQQGWAGLWESRMIAAVPSWGGTSLA : . :. gi|818 QEEYQEYEPEA 130 >>gi|56269649|gb|AAH87579.1| Synuclein, beta [Rattus nor (134 aa) initn: 196 init1: 196 opt: 199 Z-score: 256.6 bits: 52.8 E(): 1.2e-05 Smith-Waterman score: 199; 83.333% identity (91.667% similar) in 36 aa overlap (46-81:94-129) 20 30 40 50 60 70 hh0090 LPHSNPPKAYHCGNLGGILAVLTSPDLFCPQPEEVAQEAAEEPLIEPLMEPEGESYEDPP .::::::::::::::::::::::::::: : gi|562 SHLGGAVFSGAGNIAAATGLVKKEEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDSP 70 80 90 100 110 120 80 90 100 hh0090 QVRGQQGWAGLWESRMIAAVPSWGGTSLA : . :. gi|562 QEEYQEYEPEA 130 >>gi|2501106|sp|Q63754|SYUB_RAT Beta-synuclein (Phosphon (137 aa) initn: 196 init1: 196 opt: 199 Z-score: 256.4 bits: 52.8 E(): 1.2e-05 Smith-Waterman score: 199; 83.333% identity (91.667% similar) in 36 aa overlap (46-81:94-129) 20 30 40 50 60 70 hh0090 LPHSNPPKAYHCGNLGGILAVLTSPDLFCPQPEEVAQEAAEEPLIEPLMEPEGESYEDPP .::::::::::::::::::::::::::: : gi|250 SHLGGAVFSGAGNIAAATGLVKKEEFPTDLKPEEVAQEAAEEPLIEPLMEPEGESYEDSP 70 80 90 100 110 120 80 90 100 hh0090 QVRGQQGWAGLWESRMIAAVPSWGGTSLA : . :. gi|250 QEEYQEYEPEAKGP 130 104 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 05:41:11 2008 done: Tue Aug 12 05:44:19 2008 Total Scan time: 503.580 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]