hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-05500826/chunk_1/iprscan-20080812-05500826.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh01018 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01835.9.fs Alpha-2-macroglobulin family N-terminal regi 218.0 2e-62 1 PF07703.4.fs Alpha-2-macroglobulin family N-terminal regi 216.5 5.5e-62 2 PF01835.9.ls Alpha-2-macroglobulin family N-terminal regi 213.6 4.1e-61 1 PF07703.4.ls Alpha-2-macroglobulin family N-terminal regi 210.6 3.4e-60 1 PF00207.12.fs Alpha-2-macroglobulin family 152.0 3.1e-43 1 PF00207.12.ls Alpha-2-macroglobulin family 153.9 3.9e-43 1 PF01821.8.fs Anaphylotoxin-like domain 62.1 3.2e-24 1 PF01821.8.ls Anaphylotoxin-like domain 64.0 4.4e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01835.9.ls 1/1 77 363 .. 1 307 [] 213.6 4.1e-61 PF01835.9.fs 1/1 93 363 .. 17 307 .] 218.0 2e-62 PF07703.4.fs 2/2 532 686 .. 1 161 [] 208.6 1.3e-59 PF07703.4.ls 1/1 532 686 .. 1 161 [] 210.6 3.4e-60 PF01821.8.ls 1/1 769 803 .. 1 37 [] 64.0 4.4e-16 PF01821.8.fs 1/1 769 803 .. 1 37 [] 62.1 3.2e-24 PF00207.12.fs 1/1 843 936 .. 1 106 [] 152.0 3.1e-43 PF00207.12.ls 1/1 843 936 .. 1 106 [] 153.9 3.9e-43 Alignments of top-scoring domains: PF01835.9.ls: domain 1 of 1, from 77 to 363: score 213.6, E = 4.1e-61 *->lllvsliglstqsgdpkylVfvpsllrggpvenvkvelhdrkgevla + g+ + + +y++++p+++r+g++en++++++ ++ hh01018 77 RAGPTGCGAFAFGLRCRYVISAPKIFRVGASENIVIQVY------GY 117 tgttdvqghvelspgkkklfllalcsgfttlrslsssaldlsvkipgsrf t+ +d++++ ++ p+kk++ ++sg+++l+s+++++++ ++i++++ hh01018 118 TEAFDATISIKSYPDKKFS----YSSGHVHLSSENKFQNSAILTIQPKQL 163 .fsIswrfkDqr..qyVavqafpqv..eekvvlvsgqsgkvFiqTDkpiY + + q + yV+++++ ++ k +++++ +g++Fi+TDkp+Y hh01018 164 pGG-------QNpvSYVYLEVVSKHfsKSKRMPITYDNGFLFIHTDKPVY 206 rPGetVhfrvvRfsrdqdgknlrPlkedipPvtveiedPdGnrvks.... +P+++V++rv s+ + +l+P k+++ ++++dP+G++v++ ++ hh01018 207 TPDQSVKVRV--YSLND---DLKPAKRETV---LTFIDPEGSEVDMveei 248 dqwvslkldwenGlfslsfpLpeeaptGlWkivakygggpkqshs..FeV d+ ++++ +f++p+++ +G W+i+aky+++ +++++ FeV hh01018 249 DHIGIISF--------PDFKIPSNPRYGMWTIKAKYKEDFSTTGTayFEV 290 eEyVlPrFeVelklppkkflilde..eltiticarYlyGkPVaggkvtvs +EyVlP+F+V ++ p+ f+ +++ ++++iti+arY+y k V ++ v++ hh01018 291 KEYVLPHFSVSIE-PEYNFIGYKNfkNFEITIKARYFYNKVVTEADVYIT 339 lgvqpldtak.kalpgylfgvpde<-* +g++++ ++k+++++ +++ + hh01018 340 FGIREDLKDDqKEMMQTAMQNTML 363 PF01835.9.fs: domain 1 of 1, from 93 to 363: score 218.0, E = 2e-62 *->kylVfvpsllrggpvenvkvelhdrkgevlatgttdvqghvelspgk +y++++p+++r+g++en++++++ ++t+ +d++++ ++ p+k hh01018 93 RYVISAPKIFRVGASENIVIQVY------GYTEAFDATISIKSYPDK 133 kklfllalcsgfttlrslsssaldlsvkipgsrf.fsIswrfkDqr..qy k++ ++sg+++l+s+++++++ ++i++++ + + q + y hh01018 134 KFS----YSSGHVHLSSENKFQNSAILTIQPKQLpGG-------QNpvSY 172 Vavqafpqv..eekvvlvsgqsgkvFiqTDkpiYrPGetVhfrvvRfsrd V+++++ ++ k +++++ +g++Fi+TDkp+Y+P+++V++rv s+ hh01018 173 VYLEVVSKHfsKSKRMPITYDNGFLFIHTDKPVYTPDQSVKVRV--YSLN 220 qdgknlrPlkedipPvtveiedPdGnrvks....dqwvslkldwenGlfs + +l+P k+++ ++++dP+G++v++ ++ d+ ++++ hh01018 221 D---DLKPAKRETV---LTFIDPEGSEVDMveeiDHIGIISF-------- 256 lsfpLpeeaptGlWkivakygggpkqshs..FeVeEyVlPrFeVelklpp +f++p+++ +G W+i+aky+++ +++++ FeV+EyVlP+F+V ++ p+ hh01018 257 PDFKIPSNPRYGMWTIKAKYKEDFSTTGTayFEVKEYVLPHFSVSIE-PE 305 kkflilde..eltiticarYlyGkPVaggkvtvslgvqpldtak.kalpg f+ +++ ++++iti+arY+y k V ++ v++ +g++++ ++k++++ hh01018 306 YNFIGYKNfkNFEITIKARYFYNKVVTEADVYITFGIREDLKDDqKEMMQ 355 ylfgvpde<-* + +++ + hh01018 356 TAMQNTML 363 PF07703.4.fs: domain 2 of 2, from 532 to 686: score 208.6, E = 1.3e-59 *->sksyLhlsld.nkkelkvGetlkvtinaplpgkelkitdfyYlvlsr s+syL++++++n+k l vGe+l++ +++++p +kit+++Yl+ls+ hh01018 532 SQSYLYIDWTdNHKALLVGEHLNIIVTPKSPYI-DKITHYNYLILSK 577 GkIvltgrikvdggqgelkgsttisipvtaeMaPsarlvaYyvrpdapdg GkI+++g+ ++ +++ + ++i+ipvt++M+Ps rl++Yy++ +++ hh01018 578 GKIIHFGTREKFSDA----SYQSINIPVTQNMVPSSRLLVYYIV---TGE 620 .tpevvaDSvwvdVedccknkvslsfsp..eqykPgelkvtLrvssgdpg +t+e+v+DSvw+++e++c n++++++sp+ + y Pg+ +v+L + + hh01018 621 qTAELVSDSVWLNIEEKCGNQLQVHLSPdaDAYSPGQ-TVSLNM-ATGMD 668 slVgLsAVDkaVylLksg<-* s+V+L+AVD aVy +++g hh01018 669 SWVALAAVDSAVYGVQRG 686 PF07703.4.ls: domain 1 of 1, from 532 to 686: score 210.6, E = 3.4e-60 *->sksyLhlsld.nkkelkvGetlkvtinaplpgkelkitdfyYlvlsr s+syL++++++n+k l vGe+l++ +++++p +kit+++Yl+ls+ hh01018 532 SQSYLYIDWTdNHKALLVGEHLNIIVTPKSPYI-DKITHYNYLILSK 577 GkIvltgrikvdggqgelkgsttisipvtaeMaPsarlvaYyvrpdapdg GkI+++g+ ++ +++ + ++i+ipvt++M+Ps rl++Yy++ +++ hh01018 578 GKIIHFGTREKFSDA----SYQSINIPVTQNMVPSSRLLVYYIV---TGE 620 .tpevvaDSvwvdVedccknkvslsfsp..eqykPgelkvtLrvssgdpg +t+e+v+DSvw+++e++c n++++++sp+ + y Pg+ +v+L + + hh01018 621 qTAELVSDSVWLNIEEKCGNQLQVHLSPdaDAYSPGQ-TVSLNM-ATGMD 668 slVgLsAVDkaVylLksg<-* s+V+L+AVD aVy +++g hh01018 669 SWVALAAVDSAVYGVQRG 686 PF01821.8.ls: domain 1 of 1, from 769 to 803: score 64.0, E = 4.4e-16 *->CCeDGmrenPlmgqsCeeRaaritdGkeCrkAFleCC<-* CC+DG+++n ++++Ce+Raari+ G++C+kAF eCC hh01018 769 CCYDGACVN--NDETCEQRAARISLGPRCIKAFTECC 803 PF01821.8.fs: domain 1 of 1, from 769 to 803: score 62.1, E = 3.2e-24 *->CCeDGmrenPlmgqsCeeRaaritdGkeCrkAFleCC<-* CC+DG+++n ++++Ce+Raari+ G++C+kAF eCC hh01018 769 CCYDGACVN--NDETCEQRAARISLGPRCIKAFTECC 803 PF00207.12.fs: domain 1 of 1, from 843 to 936: score 152.0, E = 3.1e-43 *->sWLWediklgesgrlknkeisskelnvtlPDSITtWeitAfslSptk sWLWe++ ++ r+k +l+ lPDS+TtWei+++++S ++ hh01018 843 SWLWEVHLVP---RRK-------QLQFALPDSLTTWEIQGVGIS-NT 878 GlcvaepplelkVFkpFFidLnLPYSVkRgEqveikaivfNYlekdieik G+cva++ ++ kVFk++F+++n PYSV+RgEq+++k +v+NY+ + ++++ hh01018 879 GICVADT-VKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFC 927 Vrvtleese<-* V+++++e++ hh01018 928 VKMSAVEGI 936 PF00207.12.ls: domain 1 of 1, from 843 to 936: score 153.9, E = 3.9e-43 *->sWLWediklgesgrlknkeisskelnvtlPDSITtWeitAfslSptk sWLWe++ ++ r+k +l+ lPDS+TtWei+++++S ++ hh01018 843 SWLWEVHLVP---RRK-------QLQFALPDSLTTWEIQGVGIS-NT 878 GlcvaepplelkVFkpFFidLnLPYSVkRgEqveikaivfNYlekdieik G+cva++ ++ kVFk++F+++n PYSV+RgEq+++k +v+NY+ + ++++ hh01018 879 GICVADT-VKAKVFKDVFLEMNIPYSVVRGEQIQLKGTVYNYRTSGMQFC 927 Vrvtleese<-* V+++++e++ hh01018 928 VKMSAVEGI 936 //