# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohh01039.fasta.nr -Q hh01039.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hh01039, 101 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6842436 sequences Expectation_n fit: rho(ln(x))= 5.3664+/-0.00019; mu= 4.6845+/- 0.011 mean_var=81.7564+/-15.769, 0's: 37 Z-trim: 40 B-trim: 0 in 0/66 Lambda= 0.141845 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087644|dbj|BAD92269.1| activating transcripti ( 101) 698 151.0 2.5e-35 gi|119613789|gb|EAW93383.1| activating transcripti ( 228) 426 95.6 2.7e-18 gi|55665722|emb|CAH72657.1| activating transcripti ( 124) 417 93.5 6e-18 gi|32967477|gb|AAP92420.1| activating transcriptio ( 124) 417 93.5 6e-18 gi|109018351|ref|XP_001107862.1| PREDICTED: activa ( 152) 417 93.6 7e-18 gi|149641463|ref|XP_001510653.1| PREDICTED: simila ( 181) 417 93.7 8e-18 gi|109018349|ref|XP_001107982.1| PREDICTED: activa ( 181) 417 93.7 8e-18 gi|149708559|ref|XP_001489152.1| PREDICTED: simila ( 181) 417 93.7 8e-18 gi|266482|sp|P29596|ATF3_RAT Cyclic AMP-dependent ( 181) 417 93.7 8e-18 gi|1167508|dbj|BAA09095.1| TI-241 [Mus musculus] ( 181) 417 93.7 8e-18 gi|2497472|sp|Q60765|ATF3_MOUSE Cyclic AMP-depende ( 181) 417 93.7 8e-18 gi|1168543|sp|P18847|ATF3_HUMAN Cyclic AMP-depende ( 181) 417 93.7 8e-18 gi|73960868|ref|XP_852475.1| PREDICTED: similar to ( 181) 417 93.7 8e-18 gi|122136032|sp|Q2KII1|ATF3_BOVIN Cyclic AMP-depen ( 181) 417 93.7 8e-18 gi|30584299|gb|AAP36398.1| Homo sapiens activating ( 182) 417 93.7 8e-18 gi|114572464|ref|XP_524528.2| PREDICTED: similar t ( 342) 417 93.9 1.3e-17 gi|126306809|ref|XP_001366854.1| PREDICTED: simila ( 181) 409 92.0 2.5e-17 gi|226728|prf||1604249C transcription factor ATF3 ( 222) 410 92.3 2.5e-17 gi|118087902|ref|XP_419429.2| PREDICTED: similar t ( 181) 408 91.8 2.9e-17 gi|51261960|gb|AAH80002.1| MGC81814 protein [Xenop ( 181) 408 91.8 2.9e-17 gi|55665720|emb|CAH72655.1| activating transcripti ( 175) 381 86.3 1.3e-15 gi|28278340|gb|AAH45371.1| Activating transcriptio ( 202) 372 84.5 5.2e-15 gi|47213121|emb|CAF89541.1| unnamed protein produc ( 186) 350 80.0 1.1e-13 gi|1117952|gb|AAC59776.1| atf_like protein ( 68) 248 58.7 9.8e-08 gi|47224294|emb|CAG09140.1| unnamed protein produc ( 159) 249 59.2 1.6e-07 gi|126282292|ref|XP_001367689.1| PREDICTED: simila ( 162) 248 59.0 1.9e-07 gi|118091866|ref|XP_421278.2| PREDICTED: similar t ( 163) 248 59.0 1.9e-07 gi|6648146|gb|AAF21148.1|AC009363_1 jdp2 [Homo sap ( 96) 242 57.6 3e-07 gi|73964314|ref|XP_854752.1| PREDICTED: similar to ( 163) 242 57.8 4.5e-07 gi|74751626|sp|Q8WYK2.1|JDP2_HUMAN Jun dimerizatio ( 163) 242 57.8 4.5e-07 gi|76628236|ref|XP_884128.1| PREDICTED: similar to ( 163) 242 57.8 4.5e-07 gi|55641081|ref|XP_510076.1| PREDICTED: Jun dimeri ( 163) 242 57.8 4.5e-07 gi|194225212|ref|XP_001490986.2| PREDICTED: simila ( 163) 242 57.8 4.5e-07 gi|125842680|ref|XP_698810.2| PREDICTED: similar t ( 161) 241 57.6 5.1e-07 gi|12248392|dbj|BAB20088.1| transcriptional inhibi ( 163) 240 57.4 5.9e-07 gi|81886989|sp|P97875.2|JDP2_MOUSE Jun dimerizatio ( 163) 240 57.4 5.9e-07 gi|148670927|gb|EDL02874.1| Jun dimerization prote ( 175) 240 57.4 6.3e-07 gi|148670928|gb|EDL02875.1| Jun dimerization prote ( 212) 240 57.5 7.2e-07 gi|148670926|gb|EDL02873.1| Jun dimerization prote ( 240) 240 57.5 7.9e-07 gi|149025210|gb|EDL81577.1| Jun dimerization prote ( 312) 240 57.6 9.7e-07 gi|47230206|emb|CAG10620.1| unnamed protein produc ( 160) 235 56.4 1.2e-06 gi|93276463|gb|AAI15853.1| Jundm2 protein [Mus mus ( 54) 210 50.9 1.8e-05 gi|82200275|sp|Q6DGM8.1|JDP2_DANRE Jun dimerizatio ( 156) 210 51.2 4e-05 >>gi|62087644|dbj|BAD92269.1| activating transcription f (101 aa) initn: 698 init1: 698 opt: 698 Z-score: 789.4 bits: 151.0 E(): 2.5e-35 Smith-Waterman score: 698; 100.000% identity (100.000% similar) in 101 aa overlap (1-101:1-101) 10 20 30 40 50 60 hh0103 APVCPRYTPASRQQPRPPPPHWPLAPFLMPLLLVPQESEKLESVNAELKAQIEELKNEKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 APVCPRYTPASRQQPRPPPPHWPLAPFLMPLLLVPQESEKLESVNAELKAQIEELKNEKQ 10 20 30 40 50 60 70 80 90 100 hh0103 HLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS ::::::::::::::::::::::::::::::::::::::::: gi|620 HLIYMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS 70 80 90 100 >>gi|119613789|gb|EAW93383.1| activating transcription f (228 aa) initn: 426 init1: 426 opt: 426 Z-score: 483.7 bits: 95.6 E(): 2.7e-18 Smith-Waterman score: 426; 98.529% identity (98.529% similar) in 68 aa overlap (34-101:161-228) 10 20 30 40 50 60 hh0103 CPRYTPASRQQPRPPPPHWPLAPFLMPLLLVPQESEKLESVNAELKAQIEELKNEKQHLI : :::::::::::::::::::::::::::: gi|119 VSLKKRVCIFLNPVLLSHLPSSSRSLMSPGVSQESEKLESVNAELKAQIEELKNEKQHLI 140 150 160 170 180 190 70 80 90 100 hh0103 YMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS :::::::::::::::::::::::::::::::::::::: gi|119 YMLNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS 200 210 220 >>gi|55665722|emb|CAH72657.1| activating transcription f (124 aa) initn: 417 init1: 417 opt: 417 Z-score: 477.4 bits: 93.5 E(): 6e-18 Smith-Waterman score: 417; 98.485% identity (100.000% similar) in 66 aa overlap (36-101:59-124) 10 20 30 40 50 60 hh0103 RYTPASRQQPRPPPPHWPLAPFLMPLLLVPQESEKLESVNAELKAQIEELKNEKQHLIYM .::::::::::::::::::::::::::::: gi|556 DERKKRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYM 30 40 50 60 70 80 70 80 90 100 hh0103 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS :::::::::::::::::::::::::::::::::::: gi|556 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS 90 100 110 120 >>gi|32967477|gb|AAP92420.1| activating transcription fa (124 aa) initn: 417 init1: 417 opt: 417 Z-score: 477.4 bits: 93.5 E(): 6e-18 Smith-Waterman score: 417; 98.485% identity (100.000% similar) in 66 aa overlap (36-101:59-124) 10 20 30 40 50 60 hh0103 RYTPASRQQPRPPPPHWPLAPFLMPLLLVPQESEKLESVNAELKAQIEELKNEKQHLIYM .::::::::::::::::::::::::::::: gi|329 DERKRRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYM 30 40 50 60 70 80 70 80 90 100 hh0103 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS :::::::::::::::::::::::::::::::::::: gi|329 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS 90 100 110 120 >>gi|109018351|ref|XP_001107862.1| PREDICTED: activating (152 aa) initn: 417 init1: 417 opt: 417 Z-score: 476.2 bits: 93.6 E(): 7e-18 Smith-Waterman score: 417; 98.485% identity (100.000% similar) in 66 aa overlap (36-101:87-152) 10 20 30 40 50 60 hh0103 RYTPASRQQPRPPPPHWPLAPFLMPLLLVPQESEKLESVNAELKAQIEELKNEKQHLIYM .::::::::::::::::::::::::::::: gi|109 DERKKRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYM 60 70 80 90 100 110 70 80 90 100 hh0103 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS :::::::::::::::::::::::::::::::::::: gi|109 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS 120 130 140 150 >>gi|149641463|ref|XP_001510653.1| PREDICTED: similar to (181 aa) initn: 417 init1: 417 opt: 417 Z-score: 475.2 bits: 93.7 E(): 8e-18 Smith-Waterman score: 417; 98.485% identity (100.000% similar) in 66 aa overlap (36-101:116-181) 10 20 30 40 50 60 hh0103 RYTPASRQQPRPPPPHWPLAPFLMPLLLVPQESEKLESVNAELKAQIEELKNEKQHLIYM .::::::::::::::::::::::::::::: gi|149 DERKKRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYM 90 100 110 120 130 140 70 80 90 100 hh0103 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS :::::::::::::::::::::::::::::::::::: gi|149 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS 150 160 170 180 >>gi|109018349|ref|XP_001107982.1| PREDICTED: activating (181 aa) initn: 417 init1: 417 opt: 417 Z-score: 475.2 bits: 93.7 E(): 8e-18 Smith-Waterman score: 417; 98.485% identity (100.000% similar) in 66 aa overlap (36-101:116-181) 10 20 30 40 50 60 hh0103 RYTPASRQQPRPPPPHWPLAPFLMPLLLVPQESEKLESVNAELKAQIEELKNEKQHLIYM .::::::::::::::::::::::::::::: gi|109 DERKKRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYM 90 100 110 120 130 140 70 80 90 100 hh0103 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS :::::::::::::::::::::::::::::::::::: gi|109 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS 150 160 170 180 >>gi|149708559|ref|XP_001489152.1| PREDICTED: similar to (181 aa) initn: 417 init1: 417 opt: 417 Z-score: 475.2 bits: 93.7 E(): 8e-18 Smith-Waterman score: 417; 98.485% identity (100.000% similar) in 66 aa overlap (36-101:116-181) 10 20 30 40 50 60 hh0103 RYTPASRQQPRPPPPHWPLAPFLMPLLLVPQESEKLESVNAELKAQIEELKNEKQHLIYM .::::::::::::::::::::::::::::: gi|149 DERKKRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYM 90 100 110 120 130 140 70 80 90 100 hh0103 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS :::::::::::::::::::::::::::::::::::: gi|149 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS 150 160 170 180 >>gi|266482|sp|P29596|ATF3_RAT Cyclic AMP-dependent tran (181 aa) initn: 417 init1: 417 opt: 417 Z-score: 475.2 bits: 93.7 E(): 8e-18 Smith-Waterman score: 417; 98.485% identity (100.000% similar) in 66 aa overlap (36-101:116-181) 10 20 30 40 50 60 hh0103 RYTPASRQQPRPPPPHWPLAPFLMPLLLVPQESEKLESVNAELKAQIEELKNEKQHLIYM .::::::::::::::::::::::::::::: gi|266 DERKRRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYM 90 100 110 120 130 140 70 80 90 100 hh0103 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS :::::::::::::::::::::::::::::::::::: gi|266 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS 150 160 170 180 >>gi|1167508|dbj|BAA09095.1| TI-241 [Mus musculus] (181 aa) initn: 417 init1: 417 opt: 417 Z-score: 475.2 bits: 93.7 E(): 8e-18 Smith-Waterman score: 417; 98.485% identity (100.000% similar) in 66 aa overlap (36-101:116-181) 10 20 30 40 50 60 hh0103 RYTPASRQQPRPPPPHWPLAPFLMPLLLVPQESEKLESVNAELKAQIEELKNEKQHLIYM .::::::::::::::::::::::::::::: gi|116 DERKRRRRERNKIAAAKCRNKKKEKTECLQKESEKLESVNAELKAQIEELKNEKQHLIYM 90 100 110 120 130 140 70 80 90 100 hh0103 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS :::::::::::::::::::::::::::::::::::: gi|116 LNLHRPTCIVRAQNGRTPEDERNLFIQQIKEGTLQS 150 160 170 180 101 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 05:53:45 2008 done: Tue Aug 12 05:56:55 2008 Total Scan time: 491.360 Total Display time: 0.000 Function used was FASTA [version 34.26.5 April 26, 2007]