hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-06022946/chunk_1/iprscan-20080812-06022946.nocrc
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Query sequence: hh01184
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03535.4.fs Paxillin family                                444.3   1.4e-137   1
PF03535.4.ls Paxillin family                                446.2   3.9e-131   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03535.4.fs   1/1      51   260 ..     1   220 []   444.3 1.4e-137
PF03535.4.ls   1/1      51   260 ..     1   220 []   446.2 3.9e-131

Alignments of top-scoring domains:
PF03535.4.fs: domain 1 of 1, from 51 to 260: score 444.3, E = 1.4e-137
                   *->avPPPvPaaPaakaLNGTliDsLDsWtnsvsRYiqQePqsqsPlYsS
                      avPPPvP++P+++aLNGT+ D+LD+W++s sR+i+Q+Pqs sP+Y S
     hh01184    51    AVPPPVPPPPSSEALNGTILDPLDQWQPSGSRFIHQQPQSSSPVYGS 97   

                   SaKsssAsvakDilsSPSPRasEEEHVYSFPNKQkSAEPSPTvtSsSlGS
                   SaK ss s ++D  +SP  R +EEEHVYSFPNKQkSAEPSPTv+S+SlGS
     hh01184    98 SAKTSSVSNPQDSVGSPCSRVGEEEHVYSFPNKQKSAEPSPTVMSTSLGS 147  

                   NLSELDRLLLELNAVQeaPtSslSsEmiHsLYPkDdliRSmslPvvtaPl
                   NLSELDRLLLELNAVQ++P+ ++          +D+   S++lP +  Pl
     hh01184   148 NLSELDRLLLELNAVQHNPP-GFP---------ADEANSSPPLPGALSPL 187  

                   yvildSSsSAggKavqPskEKPkRNGtrGIEDVRPSVESLLDELEsSVPs
                   y +++  s  ggKa + +kEKPkRNG+rG EDVRPSVESLLDELEsSVPs
     hh01184   188 YGVPETNSPLGGKAGPLTKEKPKRNGGRGLEDVRPSVESLLDELESSVPS 237  

                   PVaavivSQGdvSSPQrvNaSeq<-*
                   PV+a++v QG+ SSPQrv + +q   
     hh01184   238 PVPAITVNQGEMSSPQRVTSTQQ    260  

PF03535.4.ls: domain 1 of 1, from 51 to 260: score 446.2, E = 3.9e-131
                   *->avPPPvPaaPaakaLNGTliDsLDsWtnsvsRYiqQePqsqsPlYsS
                      avPPPvP++P+++aLNGT+ D+LD+W++s sR+i+Q+Pqs sP+Y S
     hh01184    51    AVPPPVPPPPSSEALNGTILDPLDQWQPSGSRFIHQQPQSSSPVYGS 97   

                   SaKsssAsvakDilsSPSPRasEEEHVYSFPNKQkSAEPSPTvtSsSlGS
                   SaK ss s ++D  +SP  R +EEEHVYSFPNKQkSAEPSPTv+S+SlGS
     hh01184    98 SAKTSSVSNPQDSVGSPCSRVGEEEHVYSFPNKQKSAEPSPTVMSTSLGS 147  

                   NLSELDRLLLELNAVQeaPtSslSsEmiHsLYPkDdliRSmslPvvtaPl
                   NLSELDRLLLELNAVQ++P+ ++          +D+   S++lP +  Pl
     hh01184   148 NLSELDRLLLELNAVQHNPP-GFP---------ADEANSSPPLPGALSPL 187  

                   yvildSSsSAggKavqPskEKPkRNGtrGIEDVRPSVESLLDELEsSVPs
                   y +++  s  ggKa + +kEKPkRNG+rG EDVRPSVESLLDELEsSVPs
     hh01184   188 YGVPETNSPLGGKAGPLTKEKPKRNGGRGLEDVRPSVESLLDELESSVPS 237  

                   PVaavivSQGdvSSPQrvNaSeq<-*
                   PV+a++v QG+ SSPQrv + +q   
     hh01184   238 PVPAITVNQGEMSSPQRVTSTQQ    260  

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