hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-06081390/chunk_1/iprscan-20080812-06081390.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh01240 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00063.11.fs Myosin head (motor domain) 604.6 8.2e-179 2 PF00063.11.ls Myosin head (motor domain) 511.2 1.1e-150 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00063.11.fs 1/2 39 252 .. 1 221 [. 255.2 4.6e-75 PF00063.11.ls 1/1 39 638 .] 1 791 [] 511.2 1.1e-150 PF00063.11.fs 2/2 278 633 .. 260 699 .. 349.4 1.2e-102 Alignments of top-scoring domains: PF00063.11.fs: domain 1 of 2, from 39 to 252: score 255.2, E = 4.6e-75 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp ++Dl++ + ++ ++vL L+ RY+ +d +YT+ G Lv++NP+k +p hh01240 39 LDDLTRVNPVTLETVLRCLQARYM-ADTFYTNAGCTLVALNPFKPVP 84 .iYteeiikaYrG.krrgElpPHiFAiAdeAYRsMlsdke..NQsIlisG ++Y++e + +Y+ ++ ++l+PH+F + + YR+ +s e+ NQsI++sG hh01240 85 qLYSPELMREYHAaPQPQKLKPHVFTVGEQTYRNVKSLIEpvNQSIVVSG 134 ESGAGKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNP ESGAGKT ++ +m++ A v+ s p a ++ k+ +++e+ il s P hh01240 135 ESGAGKTWTSRCLMKFYAVVATS-P----ASWESHKIAERIEQRILNSSP 179 iLEAFGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKS ++EAFGNA T+RNNNSSRFGKfi++q + + ++ G+ ++tYLLEK+ hh01240 180 VMEAFGNACTLRNNNSSRFGKFIQLQLNRAQQM----TGAAVQTYLLEKT 225 RVvyQtegERNFHIFYQLLagasaqeek<-* RV+ Q++ ERNFHIFYQ+++gas+ e + hh01240 226 RVACQASSERNFHIFYQICKGASEDE-R 252 PF00063.11.ls: domain 1 of 1, from 39 to 638: score 511.2, E = 1.1e-150 *->veDlveLtylnEpsvLhNLkkRYtsgdlIYTYsGlvLvsvNPYkrLp ++Dl++ + ++ ++vL L+ RY+ +d +YT+ G Lv++NP+k +p hh01240 39 LDDLTRVNPVTLETVLRCLQARYM-ADTFYTNAGCTLVALNPFKPVP 84 .iYteeiikaYrG.krrgElpPHiFAiAdeAYRsMlsdke..NQsIlisG ++Y++e + +Y+ ++ ++l+PH+F + + YR+ +s e+ NQsI++sG hh01240 85 qLYSPELMREYHAaPQPQKLKPHVFTVGEQTYRNVKSLIEpvNQSIVVSG 134 ESGAGKTEntKkvmqYlAsvsgstpkvesaevtpnkeegsledqilqsNP ESGAGKT ++ +m++ A v+ s p a ++ k+ +++e+ il s P hh01240 135 ESGAGKTWTSRCLMKFYAVVATS-P----ASWESHKIAERIEQRILNSSP 179 iLEAFGNAKTtRNNNSSRFGKfieIqFdatGsiNvTlvGgkIetYLLEKS ++EAFGNA T+RNNNSSRFGKfi++q + + ++ G+ ++tYLLEK+ hh01240 180 VMEAFGNACTLRNNNSSRFGKFIQLQLNRAQQM----TGAAVQTYLLEKT 225 RVvyQtegERNFHIFYQLLagasaqeekkeLkLtspadpkdYaYLnqsgT RV+ Q++ ERNFHIFYQ+++gas+ e + +L ++ L ++ hh01240 226 RVACQASSERNFHIFYQICKGASEDE-RLQWHLP---EGAAFSWLPNP-- 269 ynPcytvDdgiDDaeeFkdtrkAlkiiGftdeeqrsifrilAAILhLGNi + ++ + F+ tr+A+ +G+ +q+ if++lA++LhLGNi hh01240 270 ---ERSL-----EEDCFEVTREAMLHLGIDTPTQNNIFKVLAGLLHLGNI 311 eGFkqdqatTGneeqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrr + F+ +e+q ++ ++d + ++ +a+LLG+ + +L+ r+ hh01240 312 Q-FAASE----DEAQP-CQPMDDAKYSVRTAASLLGLPEDVLLEMVQIRT 355 iktGgggkRretvtkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLs i +G ++ kp + RD LAK iY RLFdW+V+ iN +++ hh01240 356 IRAG---RQQQVFRKPCARAECDTRRDCLAKLIYARLFDWLVSVINSSIC 402 akeQasdSrGGqaaegdDTVSITVVdlPraaldktasfIGvLDIyGFEIF a + d+ fIG LD yGFE F hh01240 403 ADT-----------------------------DSWTTFIGLLDVYGFESF 423 aekNSFEQLcINYvNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDn NS+EQLcINY+NEKLQQ+F h + + QEEY Eg eW+fI+y Dn hh01240 424 -PDNSLEQLCINYANEKLQQHFVAHYLRAQQEEYAVEGLEWSFINY-QDN 471 qacidLIEkKkPpGIlslLDEeCrfPkatDqtFldKLlqtfsskhprlth q+c dLIE+ P+ I sl+ EeCr+ +++ l+ ++t + +p hh01240 472 QPCLDLIEG-SPISICSLINEECRLNRPSSAAQLQTRIETALAGSP---C 517 FAqkpgrfkkgksrqgkteFiikHYAGdVeYnaegfleKNkDpLfddlis + + ++++ + +Fi++HYAG V+Y++ g eKNkDp++++l hh01240 518 L-GHN-KLSR------EPSFIVVHYAGPVRYHTAGLVEKNKDPIPPELTR 559 llksSsdepllaeLFpeeelseAaNltlkapdfeadfdeeeaaaksaklg ll++S+d pll +LFp + ++ hh01240 560 LLQQSQD-PLLMGLFPTNPK----------------------------EK 580 sgkgksgkkknfleTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNek ++++++g++ ++ Tv s+fk sl L+ L st +PH++RCIKPN+ hh01240 581 TQEEPPGQSRAPVLTVVSKFKASLEQLLQVLHST---TPHYIRCIKPNSQ 627 KkagqFDaslVlhQlrclGvLEigiRirraGFPnRitfdeFlqRYrlLap +a +F L hh01240 628 GQAQTF--------------LQ---------------------------- 635 ktwpsgfrpewvgdakkgceliLqslrqtpgnlDkeeyrfGkTKiFfR<- ++ hh01240 636 -----------------------EEA---------------------- 638 * hh01240 - - PF00063.11.fs: domain 2 of 2, from 278 to 633: score 349.4, E = 1.2e-102 *->FkdtrkAlkiiGftdeeqrsifrilAAILhLGNieGFkqdqatTGne F+ tr+A+ +G+ +q+ if++lA++LhLGNi+ F+ +e hh01240 278 FEVTREAMLHLGIDTPTQNNIFKVLAGLLHLGNIQ-FAASE----DE 319 eqAGvtvsedteeileiiaeLLGvDaeeLekaLlsrriktGgggkRretv +q ++ ++d + ++ +a+LLG+ + +L+ r+i +G ++ hh01240 320 AQP-CQPMDDAKYSVRTAASLLGLPEDVLLEMVQIRTIRAG---RQQQVF 365 tkpqnveqAryaRDALAKaiYsRLFdWiVekiNkaLsakeQasdSrGGqa kp + RD LAK iY RLFdW+V+ iN +++a + hh01240 366 RKPCARAECDTRRDCLAKLIYARLFDWLVSVINSSICADT---------- 405 aegdDTVSITVVdlPraaldktasfIGvLDIyGFEIFaekNSFEQLcINY d+ fIG LD yGFE F NS+EQLcINY hh01240 406 -------------------DSWTTFIGLLDVYGFESF-PDNSLEQLCINY 435 vNEKLQQfFNhhmFklEQEEYkrEgIeWtfIdyglDnqacidLIEkKkPp +NEKLQQ+F h + + QEEY Eg eW+fI+y Dnq+c dLIE+ P+ hh01240 436 ANEKLQQHFVAHYLRAQQEEYAVEGLEWSFINY-QDNQPCLDLIEG-SPI 483 GIlslLDEeCrfPkatDqtFldKLlqtfsskhprlthFAqkpgrfkkgks I sl+ EeCr+ +++ l+ ++t + +p + + ++++ hh01240 484 SICSLINEECRLNRPSSAAQLQTRIETALAGSP---CL-GHN-KLSR--- 525 rqgkteFiikHYAGdVeYnaegfleKNkDpLfddlisllksSsdepllae + +Fi++HYAG V+Y++ g eKNkDp++++l ll++S+d pll + hh01240 526 ---EPSFIVVHYAGPVRYHTAGLVEKNKDPIPPELTRLLQQSQD-PLLMG 571 LFpeeelseAaNltlkapdfeadfdeeeaaaksaklgsgkgksgkkknfl LFp + ++++++++g++ ++ hh01240 572 LFPTNPK----------------------------EKTQEEPPGQSRAPV 593 eTvgsqfkeslgeLmktLsstAnlnPHfvRCIKPNekKkagqF<-* Tv s+fk sl L+ L st +PH++RCIKPN+ +a +F hh01240 594 LTVVSKFKASLEQLLQVLHST---TPHYIRCIKPNSQGQAQTF 633 //