hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-06081390/chunk_1/iprscan-20080812-06081390.nocrc
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Query sequence: hh01240
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00242                                                 568.4   2.8e-166   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00242    1/1      31   637 ..     1   771 []   568.4 2.8e-166

Alignments of top-scoring domains:
SM00242: domain 1 of 1, from 31 to 637: score 568.4, E = 2.8e-166
                   *->rnppkfegVeDmvlLtyLnEpavlhNLkkRYlkdlIYTYiGlvLvav
                        +  + + +D+++   ++ ++vl  L+ RY+ d  YT++G  Lva+
     hh01240    31    GGEVLLYKLDDLTRVNPVTLETVLRCLQARYMADTFYTNAGCTLVAL 77   

                   NPYkqlppiYtdevikkYrekkdldGksrgElpPHvFAiADeAYrnMlr.
                   NP+k  p +Y++e +++Y+     +  +  +l PHvF + +  Yrn ++ 
     hh01240    78 NPFKPVPQLYSPELMREYH-----AAPQPQKLKPHVFTVGEQTYRNVKSl 122  

                   .ekeNQsIiISGESGAGKTEatKkimqYLAavsg.........svesved
                    e  NQsI++SGESGAGKT ++  +m++ A v+ ++ + ++++ +e++e+
     hh01240   123 iEPVNQSIVVSGESGAGKTWTSRCLMKFYAVVATspasweshkIAERIEQ 172  

                   qiLesNPiLEAFGNAKTvRNnNSSRFGKfieIhFdekGkivGAkIenYLL
                   +iL s P++EAFGNA T+RNnNSSRFGKfi+++ ++   ++GA + +YLL
     hh01240   173 RILNSSPVMEAFGNACTLRNNNSSRFGKFIQLQLNRAQQMTGAAVQTYLL 222  

                   EKSRVVsQakgERNYHIFYQLLaGaseelkkelgLskFSkspedYkYLnq
                   EK RV +Qa  ERN+HIFYQ+++Gase+++ +++L +       ++ L +
     hh01240   223 EKTRVACQASSERNFHIFYQICKGASEDERLQWHLPE----GAAFSWLPN 268  

                   ggtpfankryssgcltvdgiDDaee.FkeTdEvtlkAmrvlGfseeEqes
                                    + ++  e+ F+     t+ Am  lG++   q++
     hh01240   269 -----------------PERSLEEDcFEV----TREAMLHLGIDTPTQNN 297  

                   IFrilAAILHLGNieFeegrntgdnaavtslkvadeeelqkaAeLLgvdp
                   IF++lA++LHLGNi+F++++   d+a+ ++   +++ ++++aA+LLg+++
     hh01240   298 IFKVLAGLLHLGNIQFAASE---DEAQPCQPMDDAKYSVRTAASLLGLPE 344  

                   eeLekaLtkRkiktggeggsvitkplnveqAvyaRDALAKaiYsRLFdWL
                   ++L++    R+i +g++   v +kp    ++   RD LAK iY+RLFdWL
     hh01240   345 DVLLEMVQIRTIRAGRQ-QQVFRKPCARAECDTRRDCLAKLIYARLFDWL 393  

                   VkrINksl......sayfIGVLDIyGFEiFekNSFEQfCINyaNEKLQQf
                   V+ IN+s+  ++++ ++fIG LD yGFE+F  NS+EQ+CINyaNEKLQQ+
     hh01240   394 VSVINSSIcadtdsWTTFIGLLDVYGFESFPDNSLEQLCINYANEKLQQH 443  

                   FnqhvFKlEQEEYerEGIeWtfIdFfliDNQpciDLIEkKgkrPlGIlsl
                   F+ h +   QEEY  EG+eW+fI++   DNQpc+DLIE+    P+ I sl
     hh01240   444 FVAHYLRAQQEEYAVEGLEWSFINYQ--DNQPCLDLIEGS---PISICSL 488  

                   LDEeClfHAqPkgTDqtFleKLnkalyhqhhkkhphfskprkSlkkgkpk
                   ++EeC++     ++ +++  ++ +a     ++++p++             
     hh01240   489 INEECRL--NRPSSAAQLQTRIETA-----LAGSPCLGHN---------- 521  

                   krfgrtaFiikHYAGdVtYnveGFLeKNkDtLfedlieLlqsSknplias
                   k  ++++Fi+ HYAG V Y + G++eKNkD+++++l  Llq+S++pl++ 
     hh01240   522 KLSREPSFIVVHYAGPVRYHTAGLVEKNKDPIPPELTRLLQQSQDPLLMG 571  

                   LFpeeadqsssaakekssggagksrkagrrepskgtisskkrppTvGsqF
                   LFp  +   ++ ++  +s                     ++   Tv s+F
     hh01240   572 LFPTNPKEKTQEEPPGQS---------------------RAPVLTVVSKF 600  

                   k.sLneLmetLnstnPHFIRCIKPNeeKkpgvFdaslVlhQLrylGvLEn
                   k sL++L+  L+st+PH+IRCIKPN++ ++++F                 
     hh01240   601 KaSLEQLLQVLHSTTPHYIRCIKPNSQGQAQTF----------------- 633  

                   iRIRraGFPyRlpfdeFlqRYkvLlpktwppwggewknrlfgdakkacea
                                                                     
     hh01240     - -------------------------------------------------- -    

                   lLqslglgiegdnldeeeyqiGkTKvFlRnpgqlaeLEelRee<-*
                                                          l+ee   
     hh01240   634 ---------------------------------------LQEE    637  

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