# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Ohh01241.fasta.nr -Q hh01241.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 hh01241, 345 aa vs /cdna2/lib/nr/nr library 2362217958 residues in 6843189 sequences statistics sampled from 60000 to 6832606 sequences Expectation_n fit: rho(ln(x))= 5.7176+/-0.000191; mu= 7.9636+/- 0.011 mean_var=87.1646+/-17.643, 0's: 39 Z-trim: 121 B-trim: 2762 in 1/64 Lambda= 0.137374 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6843189) gi|62087652|dbj|BAD92273.1| proteasome 26S ATPase ( 345) 2232 451.9 7.8e-125 gi|109116761|ref|XP_001108909.1| PREDICTED: simila ( 477) 2078 421.4 1.5e-115 gi|12846001|dbj|BAB26990.1| unnamed protein produc ( 406) 2066 419.0 7.1e-115 gi|114669872|ref|XP_001149845.1| PREDICTED: simila ( 406) 2066 419.0 7.1e-115 gi|49065781|sp|P62197|PRS8_PIG 26S protease regula ( 406) 2066 419.0 7.1e-115 gi|54696318|gb|AAV38531.1| proteasome (prosome, ma ( 407) 2066 419.0 7.1e-115 gi|149054556|gb|EDM06373.1| peptidase (prosome, ma ( 416) 2066 419.0 7.2e-115 gi|126308659|ref|XP_001376943.1| PREDICTED: simila ( 451) 2066 419.0 7.7e-115 gi|1262435|emb|CAA61864.1| put. 26S protease subun ( 398) 2064 418.6 9.2e-115 gi|976227|dbj|BAA07919.1| 26S proteasome subunit p ( 406) 2060 417.8 1.6e-114 gi|90078576|dbj|BAE88968.1| unnamed protein produc ( 398) 2051 416.0 5.5e-114 gi|695370|gb|AAC41735.1| thyroid receptor interact ( 406) 2049 415.6 7.3e-114 gi|118102836|ref|XP_425834.2| PREDICTED: similar t ( 406) 2042 414.2 1.9e-113 gi|55729400|emb|CAH91432.1| hypothetical protein [ ( 398) 2040 413.8 2.5e-113 gi|50604137|gb|AAH77223.1| Unknown (protein for MG ( 414) 2036 413.1 4.4e-113 gi|50603847|gb|AAH78375.1| Proteasome (prosome, ma ( 406) 2030 411.9 9.9e-113 gi|39850038|gb|AAH64153.1| Hypothetical protein MG ( 414) 2030 411.9 1e-112 gi|21410100|gb|AAH30840.1| Psmc5 protein [Mus musc ( 348) 2028 411.4 1.2e-112 gi|149054555|gb|EDM06372.1| peptidase (prosome, ma ( 385) 2028 411.5 1.3e-112 gi|49255977|gb|AAH72829.1| MGC80185 protein [Xenop ( 415) 2023 410.5 2.6e-112 gi|47219715|emb|CAG12637.1| unnamed protein produc ( 406) 2021 410.1 3.4e-112 gi|3041724|sp|P46470|PRS8_XENLA 26S protease regul ( 461) 2011 408.1 1.5e-111 gi|91091360|ref|XP_972551.1| PREDICTED: similar to ( 404) 1940 394.0 2.3e-107 gi|108868799|gb|EAT33024.1| 26S protease regulator ( 403) 1932 392.4 6.9e-107 gi|190622846|gb|EDV38370.1| GF21725 [Drosophila an ( 405) 1931 392.2 8e-107 gi|54644049|gb|EAL32792.1| GA13327-PA [Drosophila ( 405) 1931 392.2 8e-107 gi|193901607|gb|EDW00474.1| GH11847 [Drosophila gr ( 405) 1927 391.5 1.4e-106 gi|167870706|gb|EDS34089.1| 26S protease regulator ( 402) 1925 391.1 1.8e-106 gi|193909139|gb|EDW08006.1| GI14329 [Drosophila mo ( 405) 1925 391.1 1.8e-106 gi|115712886|ref|XP_784151.2| PREDICTED: hypotheti ( 401) 1924 390.9 2.1e-106 gi|190650328|gb|EDV47606.1| GG19719 [Drosophila er ( 405) 1924 390.9 2.1e-106 gi|194163319|gb|EDW78220.1| GK16292 [Drosophila wi ( 405) 1923 390.7 2.4e-106 gi|194149968|gb|EDW65659.1| GJ19383 [Drosophila vi ( 405) 1923 390.7 2.4e-106 gi|14286160|sp|O18413|PRS8_DROME 26S protease regu ( 405) 1922 390.5 2.8e-106 gi|119614675|gb|EAW94269.1| proteasome (prosome, m ( 383) 1921 390.2 3e-106 gi|1709799|sp|P54814|PRS8_MANSE 26S protease regul ( 402) 1919 389.9 4.1e-106 gi|55245639|gb|EAA04200.3| AGAP007243-PA [Anophele ( 403) 1916 389.3 6.3e-106 gi|66520165|ref|XP_623053.1| PREDICTED: similar to ( 405) 1916 389.3 6.3e-106 gi|2564007|dbj|BAA22935.1| proteasome p45/SUG [Rat ( 374) 1914 388.9 7.8e-106 gi|156228726|gb|EDO49524.1| predicted protein [Nem ( 398) 1913 388.7 9.3e-106 gi|2245467|gb|AAC48284.1| DUG [Drosophila melanoga ( 405) 1911 388.3 1.2e-105 gi|193709132|ref|XP_001943740.1| PREDICTED: simila ( 408) 1907 387.5 2.2e-105 gi|156544994|ref|XP_001608055.1| PREDICTED: simila ( 405) 1905 387.1 2.8e-105 gi|52630927|gb|AAU84927.1| putative 26S protease r ( 408) 1900 386.1 5.7e-105 gi|90077142|dbj|BAE88251.1| unnamed protein produc ( 416) 1896 385.3 1e-104 gi|190655816|gb|EDV53048.1| GG11925 [Drosophila er ( 401) 1799 366.1 6e-99 gi|194185515|gb|EDW99126.1| GE23375 [Drosophila ya ( 401) 1797 365.7 7.8e-99 gi|190614965|gb|EDV30489.1| GF23322 [Drosophila an ( 402) 1794 365.1 1.2e-98 gi|56758410|gb|AAW27345.1| SJCHGC09272 protein [Sc ( 430) 1783 362.9 5.7e-98 gi|7301963|gb|AAF57069.1| CG2241-PA [Drosophila me ( 399) 1777 361.7 1.2e-97 >>gi|62087652|dbj|BAD92273.1| proteasome 26S ATPase subu (345 aa) initn: 2232 init1: 2232 opt: 2232 Z-score: 2396.4 bits: 451.9 E(): 7.8e-125 Smith-Waterman score: 2232; 100.000% identity (100.000% similar) in 345 aa overlap (1-345:1-345) 10 20 30 40 50 60 hh0124 KSYEMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KSYEMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQ 10 20 30 40 50 60 70 80 90 100 110 120 hh0124 LLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 LLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLH 70 80 90 100 110 120 130 140 150 160 170 180 hh0124 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 130 140 150 160 170 180 190 200 210 220 230 240 hh0124 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 190 200 210 220 230 240 250 260 270 280 290 300 hh0124 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA 250 260 270 280 290 300 310 320 330 340 hh0124 LLRPGRIDRKIEFPPPNEEARLDLCLSHYYPQAFSKGSPLLVYPS ::::::::::::::::::::::::::::::::::::::::::::: gi|620 LLRPGRIDRKIEFPPPNEEARLDLCLSHYYPQAFSKGSPLLVYPS 310 320 330 340 >>gi|109116761|ref|XP_001108909.1| PREDICTED: similar to (477 aa) initn: 2095 init1: 2067 opt: 2078 Z-score: 2229.4 bits: 421.4 E(): 1.5e-115 Smith-Waterman score: 2078; 96.131% identity (97.917% similar) in 336 aa overlap (2-337:77-412) 10 20 30 hh0124 KSYEMELEEGKAGSGLRQYYLSKIEELQLIV ::.::::::::::::::::::::::::::: gi|109 EERRWRLTGQSRYGGCSGGPAGYGAGCGASSYKMELEEGKAGSGLRQYYLSKIEELQLIV 50 60 70 80 90 100 40 50 60 70 80 90 hh0124 NDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 NDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKF 110 120 130 140 150 160 100 110 120 130 140 150 hh0124 VVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 VVDVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLD 170 180 190 200 210 220 160 170 180 190 200 210 hh0124 KQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 KQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 230 240 250 260 270 280 220 230 240 250 260 270 hh0124 GSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 GSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLE 290 300 310 320 330 340 280 290 300 310 320 330 hh0124 LLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDLCLSHYYP ::::::::::::::::::::::::::::::::::::::::::::::::::::. : gi|109 LLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRK 350 360 370 380 390 400 340 hh0124 QAFSKGSPLLVYPS . ...: gi|109 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDS 410 420 430 440 450 460 >>gi|12846001|dbj|BAB26990.1| unnamed protein product [M (406 aa) initn: 2053 init1: 2053 opt: 2066 Z-score: 2217.6 bits: 419.0 E(): 7.1e-115 Smith-Waterman score: 2066; 96.108% identity (97.904% similar) in 334 aa overlap (4-337:8-341) 10 20 30 40 50 hh0124 KSYEMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR .:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 10 20 30 40 50 60 60 70 80 90 100 110 hh0124 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 70 80 90 100 110 120 120 130 140 150 160 170 hh0124 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 130 140 150 160 170 180 180 190 200 210 220 230 hh0124 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 190 200 210 220 230 240 240 250 260 270 280 290 hh0124 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 250 260 270 280 290 300 300 310 320 330 340 hh0124 LDSALLRPGRIDRKIEFPPPNEEARLDLCLSHYYPQAFSKGSPLLVYPS :::::::::::::::::::::::::::. : . ...: gi|128 LDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK 310 320 330 340 350 360 gi|128 GVCTEAGMYALRERGVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 370 380 390 400 >>gi|114669872|ref|XP_001149845.1| PREDICTED: similar to (406 aa) initn: 2053 init1: 2053 opt: 2066 Z-score: 2217.6 bits: 419.0 E(): 7.1e-115 Smith-Waterman score: 2066; 96.108% identity (97.904% similar) in 334 aa overlap (4-337:8-341) 10 20 30 40 50 hh0124 KSYEMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR .:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 MRLTLCLQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 10 20 30 40 50 60 60 70 80 90 100 110 hh0124 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 70 80 90 100 110 120 120 130 140 150 160 170 hh0124 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 130 140 150 160 170 180 180 190 200 210 220 230 hh0124 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 190 200 210 220 230 240 240 250 260 270 280 290 hh0124 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 250 260 270 280 290 300 300 310 320 330 340 hh0124 LDSALLRPGRIDRKIEFPPPNEEARLDLCLSHYYPQAFSKGSPLLVYPS :::::::::::::::::::::::::::. : . ...: gi|114 LDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK 310 320 330 340 350 360 gi|114 GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 370 380 390 400 >>gi|49065781|sp|P62197|PRS8_PIG 26S protease regulatory (406 aa) initn: 2053 init1: 2053 opt: 2066 Z-score: 2217.6 bits: 419.0 E(): 7.1e-115 Smith-Waterman score: 2066; 96.108% identity (97.904% similar) in 334 aa overlap (4-337:8-341) 10 20 30 40 50 hh0124 KSYEMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR .:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|490 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 10 20 30 40 50 60 60 70 80 90 100 110 hh0124 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|490 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 70 80 90 100 110 120 120 130 140 150 160 170 hh0124 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|490 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 130 140 150 160 170 180 180 190 200 210 220 230 hh0124 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|490 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 190 200 210 220 230 240 240 250 260 270 280 290 hh0124 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|490 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 250 260 270 280 290 300 300 310 320 330 340 hh0124 LDSALLRPGRIDRKIEFPPPNEEARLDLCLSHYYPQAFSKGSPLLVYPS :::::::::::::::::::::::::::. : . ...: gi|490 LDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK 310 320 330 340 350 360 gi|490 GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 370 380 390 400 >>gi|54696318|gb|AAV38531.1| proteasome (prosome, macrop (407 aa) initn: 2053 init1: 2053 opt: 2066 Z-score: 2217.6 bits: 419.0 E(): 7.1e-115 Smith-Waterman score: 2066; 96.108% identity (97.904% similar) in 334 aa overlap (4-337:8-341) 10 20 30 40 50 hh0124 KSYEMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR .:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 10 20 30 40 50 60 60 70 80 90 100 110 hh0124 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 70 80 90 100 110 120 120 130 140 150 160 170 hh0124 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 130 140 150 160 170 180 180 190 200 210 220 230 hh0124 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 190 200 210 220 230 240 240 250 260 270 280 290 hh0124 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|546 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 250 260 270 280 290 300 300 310 320 330 340 hh0124 LDSALLRPGRIDRKIEFPPPNEEARLDLCLSHYYPQAFSKGSPLLVYPS :::::::::::::::::::::::::::. : . ...: gi|546 LDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK 310 320 330 340 350 360 gi|546 GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWKL 370 380 390 400 >>gi|149054556|gb|EDM06373.1| peptidase (prosome, macrop (416 aa) initn: 2053 init1: 2053 opt: 2066 Z-score: 2217.4 bits: 419.0 E(): 7.2e-115 Smith-Waterman score: 2066; 96.108% identity (97.904% similar) in 334 aa overlap (4-337:18-351) 10 20 30 40 hh0124 KSYEMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRN .:::::::::::::::::::::::::::::::::::::::::: gi|149 MPAVPAEGGKMALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRN 10 20 30 40 50 60 50 60 70 80 90 100 hh0124 ELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 ELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTP 70 80 90 100 110 120 110 120 130 140 150 160 hh0124 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVK 130 140 150 160 170 180 170 180 190 200 210 220 hh0124 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 HPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARM 190 200 210 220 230 240 230 240 250 260 270 280 hh0124 VRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIK 250 260 270 280 290 300 290 300 310 320 330 340 hh0124 VIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDLCLSHYYPQAFSKGSPLLVYPS :::::::::::::::::::::::::::::::::::::. : . ...: gi|149 VIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEL 310 320 330 340 350 360 gi|149 MPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 370 380 390 400 410 >>gi|126308659|ref|XP_001376943.1| PREDICTED: similar to (451 aa) initn: 2053 init1: 2053 opt: 2066 Z-score: 2216.9 bits: 419.0 E(): 7.7e-115 Smith-Waterman score: 2066; 96.108% identity (97.904% similar) in 334 aa overlap (4-337:53-386) 10 20 30 hh0124 KSYEMELEEGKAGSGLRQYYLSKIEELQLIVND .::::::::::::::::::::::::::::: gi|126 PALLRLRPEPHLDAGIRLCGGKMALDGPEQQMELEEGKAGSGLRQYYLSKIEELQLIVND 30 40 50 60 70 80 40 50 60 70 80 90 hh0124 KSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 KSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVV 90 100 110 120 130 140 100 110 120 130 140 150 hh0124 DVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 DVDKNIDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQ 150 160 170 180 190 200 160 170 180 190 200 210 hh0124 IKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 IKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 210 220 230 240 250 260 220 230 240 250 260 270 hh0124 ELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 ELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELL 270 280 290 300 310 320 280 290 300 310 320 330 hh0124 NQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDLCLSHYYPQA ::::::::::::::::::::::::::::::::::::::::::::::::::. : . gi|126 NQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMN 330 340 350 360 370 380 340 hh0124 FSKGSPLLVYPS ...: gi|126 LTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEK 390 400 410 420 430 440 >>gi|1262435|emb|CAA61864.1| put. 26S protease subunit [ (398 aa) initn: 2053 init1: 2053 opt: 2064 Z-score: 2215.6 bits: 418.6 E(): 9.2e-115 Smith-Waterman score: 2064; 96.396% identity (97.898% similar) in 333 aa overlap (5-337:1-333) 10 20 30 40 50 60 hh0124 KSYEMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 MELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQ 10 20 30 40 50 70 80 90 100 110 120 hh0124 LLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 LLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDSYTLH 60 70 80 90 100 110 130 140 150 160 170 180 hh0124 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 KILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK 120 130 140 150 160 170 190 200 210 220 230 240 hh0124 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 180 190 200 210 220 230 250 260 270 280 290 300 hh0124 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|126 IIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSA 240 250 260 270 280 290 310 320 330 340 hh0124 LLRPGRIDRKIEFPPPNEEARLDLCLSHYYPQAFSKGSPLLVYPS :::::::::::::::::::::::. : . ...: gi|126 LLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCT 300 310 320 330 340 350 gi|126 EAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 360 370 380 390 >>gi|976227|dbj|BAA07919.1| 26S proteasome subunit p45 [ (406 aa) initn: 2047 init1: 2047 opt: 2060 Z-score: 2211.2 bits: 417.8 E(): 1.6e-114 Smith-Waterman score: 2060; 95.808% identity (97.904% similar) in 334 aa overlap (4-337:8-341) 10 20 30 40 50 hh0124 KSYEMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR .:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|976 MALDGPEQMELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLR 10 20 30 40 50 60 60 70 80 90 100 110 hh0124 EELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|976 RELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNIDINDVTPNCRVALRNDS 70 80 90 100 110 120 120 130 140 150 160 170 hh0124 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|976 YTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGI 130 140 150 160 170 180 180 190 200 210 220 230 hh0124 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|976 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMARE 190 200 210 220 230 240 240 250 260 270 280 290 hh0124 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|976 HAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 250 260 270 280 290 300 300 310 320 330 340 hh0124 LDSALLRPGRIDRKIEFPPPNEEARLDLCLSHYYPQAFSKGSPLLVYPS :::::::::::::::::::::::::::. : . ...: gi|976 LDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK 310 320 330 340 350 360 gi|976 GVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWK 370 380 390 400 345 residues in 1 query sequences 2362217958 residues in 6843189 library sequences Tcomplib [34.26] (8 proc) start: Tue Aug 12 06:11:53 2008 done: Tue Aug 12 06:14:25 2008 Total Scan time: 782.630 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]