hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-06142688/chunk_1/iprscan-20080812-06142688.nocrc
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Query sequence: hh01241
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00004.19.fs ATPase family associated with various cellul   240.0    2.6e-72   1
PF00004.19.ls ATPase family associated with various cellul   210.4    3.7e-60   1
PF07728.4.fs ATPase family associated with various cellul    27.2    1.1e-07   1
PF07726.2.fs ATPase family associated with various cellul    24.8    3.4e-07   1
PF07728.4.ls ATPase family associated with various cellul     4.3    0.00077   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00004.19.fs   1/1     181   322 ..     1   156 [.   240.0  2.6e-72
PF07728.4.fs   1/1     181   207 ..     1    31 [.    27.2  1.1e-07
PF07728.4.ls   1/1     181   316 ..     1   184 []     4.3  0.00077
PF00004.19.ls   1/1     181   343 ..     1   215 []   210.4  3.7e-60
PF07726.2.fs   1/1     182   210 ..     1    30 [.    24.8  3.4e-07

Alignments of top-scoring domains:
PF00004.19.fs: domain 1 of 1, from 181 to 322: score 240.0, E = 2.6e-72
                   *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv
                      gvLLyGPPGtGKTllA+avA++++++fi++sgselv+k++Ge+++ v
     hh01241   181    GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMV 227  

                   ralfelArkslkaaPspiiFIDEiDalapkRgd....egdvssrvvnqLl
                   r+lf +Ar++   aPs iiF+DEiD+++++R +++++++++++r+  +Ll
     hh01241   228 RELFVMAREH---APS-IIFMDEIDSIGSSRLEggsgGDSEVQRTMLELL 273  

                   temDLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdr
                   +++D    gfe+           +++ vi+aTNr+d+lD+ALlrpGR+dr
     hh01241   274 NQLD----GFEA----------TKNIKVIMATNRIDILDSALLRPGRIDR 309  

                   rievplPdeeeRl<-*
                   +ie+p P+ee+Rl   
     hh01241   310 KIEFPPPNEEARL    322  

PF07728.4.fs: domain 1 of 1, from 181 to 207: score 27.2, E = 1.1e-07
                   *->gvlLvGpPGtGKselaerlaealsgqggrpl<-*
                      gvlL GpPGtGK++la+ +a+++    ++ +   
     hh01241   181    GVLLYGPPGTGKTLLARAVAHHT----DCTF    207  

PF07728.4.ls: domain 1 of 1, from 181 to 316: score 4.3, E = 0.00077
                   *->gvlLvGpPGtGKselaerlaealsgqggrplfyvqltrdtteedLlg
                      gvlL GpPGtGK++la+ +a+++    ++ +  v +++      L++
     hh01241   181    GVLLYGPPGTGKTLLARAVAHHT----DCTFIRVSGSE------LVQ 217  

                   rrdiapllhGngttswvdgpLvrAaryaretegslpeghivvlDEinra.
                    +        + ++++v   +v  ar        +  + i++ DEi+ ++
     hh01241   218 KFI-------GEGARMVRELFV-MAR--------EHAPSIIFMDEIDSIg 251  

                   ..........spevlnaLlslLderrlllpdggelvkvapydklaergre
                   +++ ++++++ +ev+ ++l lL+       dg+e  k             
     hh01241   252 ssrleggsggDSEVQRTMLELLN-----QLDGFEATKN------------ 284  

                   eldlwklgrlihdfrliataNpldgprglnelsaALrrRFlfvtvdpp<-
                                + +i+++N+ d    l +++   +r    ++++pp  
     hh01241   285 -------------IKVIMATNRID---ILDSALLRPGRIDRKIEFPPP   316  

                   *
                    
     hh01241     -   -    

PF00004.19.ls: domain 1 of 1, from 181 to 343: score 210.4, E = 3.7e-60
                   *->gvLLyGPPGtGKTllAkavAnelgapfisisgselvskyvGesekrv
                      gvLLyGPPGtGKTllA+avA++++++fi++sgselv+k++Ge+++ v
     hh01241   181    GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKFIGEGARMV 227  

                   ralfelArkslkaaPspiiFIDEiDalapkRgd....egdvssrvvnqLl
                   r+lf +Ar++   aPs iiF+DEiD+++++R +++++++++++r+  +Ll
     hh01241   228 RELFVMAREH---APS-IIFMDEIDSIGSSRLEggsgGDSEVQRTMLELL 273  

                   temDLErigfedhylrgsdvfDlsgviviaaTNrpdllDpALlrpGRfdr
                   +++D    gfe+           +++ vi+aTNr+d+lD+ALlrpGR+dr
     hh01241   274 NQLD----GFEA----------TKNIKVIMATNRIDILDSALLRPGRIDR 309  

                   rievplPdeeeRleIlkihlkkmplalcqerselakdvdldelakelArr
                   +ie+p P+ee+Rl     h  + ++++        ++  l +        
     hh01241   310 KIEFPPPNEEARLDLCLSHYYPQAFSK--------GSPLLVY-------- 343  

                   tpgfsgadlaalcreAalralr<-*
                                            
     hh01241     - ----------------------    -    

PF07726.2.fs: domain 1 of 1, from 182 to 210: score 24.8, E = 3.4e-07
                   *->HvLlegvPGlaKTllvkalAkaldlkfkRi<-*
                       vLl g PG++KTll++a+A++ d++f R+   
     hh01241   182    -VLLYGPPGTGKTLLARAVAHHTDCTFIRV    210  

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