hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-06142688/chunk_1/iprscan-20080812-06142688.nocrc
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Query sequence: hh01241
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00382                                                  96.5    3.1e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00382    1/1     178   317 ..     1    92 []    96.5  3.1e-24

Alignments of top-scoring domains:
SM00382: domain 1 of 1, from 178 to 317: score 96.5, E = 3.1e-24
                   *->pgevvllvGppGsGKTTlaralarllgpgviyidge.........gg
                      +++ vll+GppG+GKT lara+a++ ++ +i+++g++  ++  ++g+
     hh01241   178    QPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSelvqkfigeGA 224  

                   qrirlalalark...dvlllDEitslld......................
                   +++r ++ +ar++ ++++++DEi+s+  ++++++++++++ ++  +++++
     hh01241   225 RMVRELFVMAREhapSIIFMDEIDSIGSsrleggsggdsevqrtmlelln 274  

                   ..........vtviattn...dldpallrr.rfdrrivllril<-*
                   ++++ +  +++ vi++tn+ ++ld+allr++r+dr+i++++++   
     hh01241   275 qldgfeatknIKVIMATNridILDSALLRPgRIDRKIEFPPPN    317  

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