hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-06195818/chunk_1/iprscan-20080812-06195818.nocrc
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Query sequence: hh01315
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00048.11.fs Small cytokines (intecrine/chemokine), inter    65.3    1.5e-18   1
PF00048.11.ls Small cytokines (intecrine/chemokine), inter    67.2      5e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00048.11.fs   1/1      10    73 ..     1    70 []    65.3  1.5e-18
PF00048.11.ls   1/1      10    73 ..     1    70 []    67.2    5e-17

Alignments of top-scoring domains:
PF00048.11.fs: domain 1 of 1, from 10 to 73: score 65.3, E = 1.5e-18
                   *->apvavdtplrCrClsytsrkIppkriksyeviptsshCpkpaVIftt
                      ++ ++  + +C   s  ++kIp+ ++++y++  +s  C k a+I  t
     hh01315    10    HHGVTKCNITC---SKMTSKIPVALLIHYQQNQAS--CGKRAIILET 51   

                   KnGrevCaDPkakWVqkyikkiL<-*
                   ++ r  CaDPk+ WV++++++ L   
     hh01315    52 RQHRLFCADPKEQWVKDAMQH-L    73   

PF00048.11.ls: domain 1 of 1, from 10 to 73: score 67.2, E = 5e-17
                   *->apvavdtplrCrClsytsrkIppkriksyeviptsshCpkpaVIftt
                      ++ ++  + +C   s  ++kIp+ ++++y++  +s  C k a+I  t
     hh01315    10    HHGVTKCNITC---SKMTSKIPVALLIHYQQNQAS--CGKRAIILET 51   

                   KnGrevCaDPkakWVqkyikkiL<-*
                   ++ r  CaDPk+ WV++++++ L   
     hh01315    52 RQHRLFCADPKEQWVKDAMQH-L    73   

//