hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-15072128/chunk_1/iprscan-20090618-15072128.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: hh01319
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.ls WD domain, G-beta repeat                       195.5    1.1e-55   6
PF00400.22.fs WD domain, G-beta repeat                       183.5    4.6e-52   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/6      81   120 ..     1    38 []    19.1  0.00021
PF00400.22.ls   2/6     125   165 ..     1    38 []    41.6  2.5e-09
PF00400.22.fs   2/6     125   165 ..     1    38 []    39.6  3.5e-10
PF00400.22.ls   3/6     169   208 ..     1    38 []    42.2  1.6e-09
PF00400.22.fs   3/6     169   208 ..     1    38 []    40.2  2.3e-10
PF00400.22.ls   4/6     212   251 ..     1    38 []    26.7  7.4e-05
PF00400.22.fs   4/6     212   251 ..     1    38 []    24.7  5.3e-06
PF00400.22.ls   5/6     256   295 ..     1    38 []    42.6  1.3e-09
PF00400.22.fs   5/6     256   295 ..     1    38 []    40.6  1.8e-10
PF00400.22.fs   6/6     300   339 ..     1    38 []    19.3  0.00018

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 6, from 81 to 120: score 19.1, E = 0.00021
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g  +    + +++  +v +s ++ ++l+++S Dg++ +Wd   
     hh01319    81    GLRLfRSfDWNDGLFDVTWSENNEHVLITCSGDGSLQLWD    120  

PF00400.22.ls: domain 2 of 6, from 125 to 165: score 41.6, E = 2.5e-09
                   *->geck.vl.gHtstVtcvafspd.sgpllasgSrDgtikiWd<-*
                        +++v++ H   V++v++s+  + +l++sgS+D t+k+Wd   
     hh01319   125    AGPLqVYkEHAQEVYSVDWSQTrGEQLVVSGSWDQTVKLWD    165  

PF00400.22.fs: domain 2 of 6, from 125 to 165: score 39.6, E = 3.5e-10
                   *->geck.vl.gHtstVtcvafspd.sgpllasgSrDgtikiWd<-*
                        +++v++ H   V++v++s+  + +l++sgS+D t+k+Wd   
     hh01319   125    AGPLqVYkEHAQEVYSVDWSQTrGEQLVVSGSWDQTVKLWD    165  

PF00400.22.ls: domain 3 of 6, from 169 to 208: score 42.2, E = 1.6e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+ + +++gH+s +++  +sp+ + ++as+S D t++iWd   
     hh01319   169    GKSLcTFrGHESIIYSTIWSPHIPGCFASASGDQTLRIWD    208  

PF00400.22.fs: domain 3 of 6, from 169 to 208: score 40.2, E = 2.3e-10
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      g+ + +++gH+s +++  +sp+ + ++as+S D t++iWd   
     hh01319   169    GKSLcTFrGHESIIYSTIWSPHIPGCFASASGDQTLRIWD    208  

PF00400.22.ls: domain 4 of 6, from 212 to 251: score 26.7, E = 7.4e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        +  v+++H++ + +++++  + +ll++g  D++++ Wd   
     hh01319   212    AGVRiVIpAHQAEILSCDWCKYNENLLVTGAVDCSLRGWD    251  

PF00400.22.fs: domain 4 of 6, from 212 to 251: score 24.7, E = 5.3e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        +  v+++H++ + +++++  + +ll++g  D++++ Wd   
     hh01319   212    AGVRiVIpAHQAEILSCDWCKYNENLLVTGAVDCSLRGWD    251  

PF00400.22.ls: domain 5 of 6, from 256 to 295: score 42.6, E = 1.3e-09
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++++ +l gHt +++ v+fsp + ++las+S D t++ W+   
     hh01319   256    RQPVfELlGHTYAIRRVKFSPFHASVLASCSYDFTVRFWN    295  

PF00400.22.fs: domain 5 of 6, from 256 to 295: score 40.6, E = 1.8e-10
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++++ +l gHt +++ v+fsp + ++las+S D t++ W+   
     hh01319   256    RQPVfELlGHTYAIRRVKFSPFHASVLASCSYDFTVRFWN    295  

PF00400.22.fs: domain 6 of 6, from 300 to 339: score 19.3, E = 0.00018
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                        ++ + ++Ht + + ++fs  s++++a +S+D tiki+d   
     hh01319   300    DSLLeTVeHHTEFTCGLDFSLQSPTQVADCSWDETIKIYD    339  

//