hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-15072128/chunk_1/iprscan-20090618-15072128.nocrc
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Query sequence: hh01319
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                 203.2    2.4e-56   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/6      81   120 ..     1    46 []    27.9   0.0014
SM00320    2/6     124   165 ..     1    46 []    41.6  1.1e-07
SM00320    3/6     168   208 ..     1    46 []    42.0  8.1e-08
SM00320    4/6     211   251 ..     1    46 []    30.1  0.00031
SM00320    5/6     255   295 ..     1    46 []    40.5  2.3e-07
SM00320    6/6     299   339 ..     1    46 []    21.3     0.14

Alignments of top-scoring domains:
SM00320: domain 1 of 6, from 81 to 120: score 27.9, E = 0.0014
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        +l r+++  ++  +  +v++s ++     +++l+++s+Dg++ lW
     hh01319    81    GlRLFRSFD-WND--GLFDVTWSENN-----EHVLITCSgDGSLQLW 119  

                   d<-*
                   d   
     hh01319   120 D    120  

SM00320: domain 2 of 6, from 124 to 165: score 41.6, E = 1.1e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                         +l+++k H +  +V+sv++s++     +++l++sgs+D t++lW
     hh01319   124    AaGPLQVYKEHAQ--EVYSVDWSQTR----GEQLVVSGSwDQTVKLW 164  

                   d<-*
                   d   
     hh01319   165 D    165  

SM00320: domain 3 of 6, from 168 to 208: score 42.0, E = 8.1e-08
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +k l+t++gH++   ++s  +sp+      p ++as+s+D t+r+W
     hh01319   168    VgKSLCTFRGHES--IIYSTIWSPHI-----PGCFASASgDQTLRIW 207  

                   d<-*
                   d   
     hh01319   208 D    208  

SM00320: domain 4 of 6, from 211 to 251: score 30.1, E = 0.00031
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                         +  ++++H++  +++s++++  +     +nll++g  D+++r W
     hh01319   211    AaGVRIVIPAHQA--EILSCDWCKYN-----ENLLVTGAvDCSLRGW 250  

                   d<-*
                   d   
     hh01319   251 D    251  

SM00320: domain 5 of 6, from 255 to 295: score 40.5, E = 2.3e-07
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       ++++++l gHt   +++ v+fsp +      ++las+s D t+r+W
     hh01319   255    VrQPVFELLGHTY--AIRRVKFSPFH-----ASVLASCSyDFTVRFW 294  

                   d<-*
                   +   
     hh01319   295 N    295  

SM00320: domain 6 of 6, from 299 to 339: score 21.3, E = 0.14
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +++ll t + Ht     ++++fs  +     p+++a +s+D ti+++
     hh01319   299    PdSLLETVEHHTE--FTCGLDFSLQS-----PTQVADCSwDETIKIY 338  

                   d<-*
                   d   
     hh01319   339 D    339  

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