hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-06254235/chunk_1/iprscan-20080812-06254235.nocrc
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Query sequence: hh01357
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00282                                                 448.6   3.2e-130   4
SM00231                                                 119.5    3.8e-31   1
SM00294                                                  37.9    1.4e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00231    1/1      98   242 ..     1   199 []   119.5  3.8e-31
SM00282    1/4     269   406 ..     1   137 []   129.6  3.5e-34
SM00282    2/4     455   589 ..     1   137 []   102.7  4.3e-26
SM00282    3/4     879  1013 ..     1   137 []   101.6  8.9e-26
SM00282    4/4    1154  1292 ..     1   137 []   114.7    1e-29
SM00294    1/1    1378  1396 ..     1    19 []    37.9  1.4e-06

Alignments of top-scoring domains:
SM00231: domain 1 of 1, from 98 to 242: score 119.5, E = 3.8e-31
                   *->eCn.eplGleggeiadsqitassstgaarelgllgwaakiaRlngng
                      +C++e +G     +++ +  ++ss+++      l +a+++aRl+g  
     hh01357    98    GCDeELVGP----LYA-RSLGASSYYS------LLTAPRFARLHG-- 131  

                   lnedygdgaWcpaknsledgifdtddphwilvDLgrklrtvtgv.TitGr
                         + +W+p  ++++         +w+++DL++k +++ +v T++ +
     hh01357   132 ------ISGWSPRIGDPN---------PWLQIDLMKK-HRIRAVaTQGSF 165  

                   rrrgdgngngdwvtyyvvaykddrrdllerlnGetWttykdfdiengtge
                           ++dwvt y +  ++dr+d         Wt+++ +      g+
     hh01357   166 -------NSWDWVTRYML-LYGDRVD--------SWTPFYQR------GH 193  

                   skvFggNadagtvvlndfppPivARYvRilPtaentratgwhngiilRlE
                   + +F+gN++ ++vv++d++ +++ARY+Ri+P+a+n     + ++i+lRl 
     hh01357   194 NSTFFGNVNESAVVRHDLHFHFTARYIRIVPLAWN-----PCGKIGLRLG 238  

                   LlGC<-*
                   L+GC   
     hh01357   239 LYGC    242  

SM00282: domain 1 of 4, from 269 to 406: score 129.6, E = 3.5e-34
                   *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr
                          + fsF+T++++GlLl+a + +gd+++leL+      + +l l+
     hh01357   269    LwDVFAFSFKTEEKDGLLLHAEgaQGDYVTLELE------GAHLLLH 309  

                   ydlGssttggparltsdsd...rptplnDGqWHrVsverngrsvtLsVDg
                   ++lGs    +p++ ++++ + +++  lnD +WH V+v r gr v+ ++D 
     hh01357   310 MSLGS----SPIQPRPGHTtvsAGGVLNDQHWHYVRVDRFGRDVNFTLD- 354  

                   gnpvsges....t.LdldkeesgplylGGlPe.....lpvspgFrGCirn
                   g  ++   +++ ++L+ld    + +++GGl    +++l+++++FrGCi+n
     hh01357   355 GYVQRFILngdfErLNLD----TEMFIGGLVGaarknLAYRHNFRGCIEN 400  

                   lrvngk<-*
                   + +n++   
     hh01357   401 VIFNRV    406  

SM00282: domain 2 of 4, from 455 to 589: score 102.7, E = 4.3e-26
                   *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl
                       +l +sf+FrT+  +GlLl++  ++g  +++l L+      +G++ +
     hh01357   455    GrLAVSFRFRTWDLTGLLLFSRlgdGLGHVELTLS------EGQVNV 495  

                   rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg..
                   ++        g+++l+     +++lnDG WH V+++ +++++++s+D+ +
     hh01357   496 SIAQS-----GRKKLQFAA--GYRLNDGFWHEVNFVAQENHAVISIDDve 538  

                   gnpvsges.t.LdldkeesgplylGGlPe.......lpvspgFrGCirnl
                   g++v+ + +  + +     +++++GG P + ++ +   +++ F+GC++ l
     hh01357   539 GAEVRVSYpLlIRTG----TSYFFGGCPKpasrwdcHSNQTAFHGCMELL 584  

                   rvngk<-*
                   +v+g+   
     hh01357   585 KVDGQ    589  

SM00282: domain 3 of 4, from 879 to 1013: score 101.6, E = 8.9e-26
                   *->t.lsisfsFrTtspnGlLlyag.......ggdflaleLvlEDsdgdG
                      ++l++sf+FrT +p+G+ l + +++  + +  ++ +eL+     +  
     hh01357   879    HsLDVSFYFRTSAPSGVFLENMggpycqwRRPYVRVELN-----TSR 920  

                   rlvlrydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsV
                    +v+ +d G+    g   lt++sd +  +nD +WH V++e+n ++++L V
     hh01357   921 DVVFAFDVGN----GDENLTVHSD-DFEFNDDEWHLVRAEINVKQARLRV 965  

                   Dggnpvsges...t.LdldkeesgplylGGlPelpvspgFrGCirnlrvn
                   D+  +v++  + +t + ++  ++ ply+G +   + + +F+GC+r  r+n
     hh01357   966 DHRPWVLRPMplqTyIWME--YDQPLYVGSAE--LKRRPFVGCLRAMRLN 1011 

                   gk<-*
                   g+   
     hh01357  1012 GV    1013 

SM00282: domain 4 of 4, from 1154 to 1292: score 114.7, E = 1e-29
                   *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr
                      t++++sfsF T s+ ++Lly+++   d++a+ ++     +dG+l+lr
     hh01357  1154    TgEEVSFSFSTSSAPAVLLYVSsfVRDYMAVLIK-----DDGTLQLR 1195 

                   ydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg..g
                   y+lG     +p + + ++   +p+ DGq+H+++++r  r++ ++VD  + 
     hh01357  1196 YQLGT----SPYVYQLTT---RPVTDGQPHSINITRVYRNLFIQVDYfpL 1238 

                   npvsges...t.LdldkeesgplylGGlPe.........lpvspgFrGCi
                    ++  +   +++Ld++      lylG + e++  +++ +  ++pgF+GC+
     hh01357  1239 TEQKFSLlvdSqLDSP----KALYLGRVMEtgvidpeiqRYNTPGFSGCL 1284 

                   rnlrvngk<-*
                   +++r+n++   
     hh01357  1285 SGVRFNNV    1292 

SM00294: domain 1 of 1, from 1378 to 1396: score 37.9, E = 1.4e-06
                   *->myrykkRdkGSYhtnEakg<-*
                      +y++++R+kGSYhtnE+k+   
     hh01357  1378    FYLQNHRYKGSYHTNEPKA    1396 

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