hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-06315334/chunk_1/iprscan-20080812-06315334.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh01495 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00102.17.ls Protein-tyrosine phosphatase 897.3 6.5e-267 2 PF00102.17.fs Protein-tyrosine phosphatase 893.7 7.9e-266 2 PF00041.11.ls Fibronectin type III domain 234.5 2.1e-67 3 PF00041.11.fs Fibronectin type III domain 233.5 4.3e-67 4 PF07679.6.fs Immunoglobulin I-set domain 138.9 6.5e-40 3 PF07679.6.ls Immunoglobulin I-set domain 141.9 1.6e-39 3 PF00047.15.ls Immunoglobulin domain 94.7 2.6e-25 3 PF00047.15.fs Immunoglobulin domain 89.1 1.1e-23 3 PF07686.7.fs Immunoglobulin V-set domain 19.5 4.9e-05 3 PF07686.7.ls Immunoglobulin V-set domain 19.3 0.00055 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF07679.6.ls 1/3 1 91 [. 1 96 [] 73.4 6.7e-19 PF07679.6.fs 1/3 1 91 [. 2 96 .] 72.5 1.6e-20 PF07686.7.ls 1/2 4 92 .. 1 141 [] 11.0 0.0038 PF00047.15.fs 1/3 14 76 .. 1 65 [] 33.6 1.8e-08 PF00047.15.ls 1/3 14 76 .. 1 65 [] 35.5 1.7e-07 PF07679.6.ls 2/3 102 198 .. 1 96 [] 39.1 1.4e-08 PF00047.15.ls 2/3 116 182 .. 1 65 [] 27.7 3.9e-05 PF00047.15.fs 2/3 116 182 .. 1 65 [] 25.7 2.6e-06 PF07679.6.fs 2/3 118 188 .. 17 87 .. 38.9 9.4e-11 PF07679.6.ls 3/3 209 292 .. 1 96 [] 29.4 3.8e-06 PF07679.6.fs 3/3 209 292 .. 1 96 [] 27.5 2e-07 PF00047.15.fs 3/3 223 277 .. 1 65 [] 29.7 2.1e-07 PF00047.15.ls 3/3 223 277 .. 1 65 [] 31.5 2.8e-06 PF00041.11.fs 1/4 296 378 .. 1 84 [] 77.2 1.6e-21 PF00041.11.ls 1/3 296 378 .. 1 84 [] 79.2 1.2e-20 PF00041.11.fs 2/4 390 477 .. 1 84 [] 69.7 2.2e-19 PF00041.11.ls 2/3 390 477 .. 1 84 [] 71.7 2.1e-18 PF00041.11.ls 3/3 489 570 .. 1 84 [] 83.6 5.8e-22 PF00041.11.fs 3/4 489 570 .. 1 84 [] 81.6 8.8e-23 PF00102.17.fs 1/2 946 1177 .. 1 275 [] 461.1 1.3e-135 PF00102.17.ls 1/2 946 1177 .. 1 275 [] 462.9 3.8e-136 PF00102.17.fs 2/2 1235 1468 .. 1 275 [] 432.6 5e-127 PF00102.17.ls 2/2 1235 1468 .. 1 275 [] 434.4 1.4e-127 Alignments of top-scoring domains: PF07679.6.ls: domain 1 of 3, from 1 to 91: score 73.4, E = 6.7e-19 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp +Ft+ p d++ G a+f C++tG+P P++ W K+G+++s+ hh01495 1 -RFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN---- 42 sdrfkvtydgGsgtytLtIsnv.qpdDsGkYtCvAtNsaGeaeasaeLtV + + +d+ + + L+I+ ++p+D+ +Y CvA+N +Ge ++s +LtV hh01495 43 QRFEVIEFDD-GSGSVLRIQPLrTPRDEAIYECVASNNVGEISVSTRLTV 91 <-* hh01495 - - PF07679.6.fs: domain 1 of 3, from 1 to 91: score 72.5, E = 1.6e-20 *->kFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllps +Ft+ p d++ G a+f C++tG+P P++ W K+G+++s+ hh01495 1 RFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSN----Q 43 drfkvtydgGsgtytLtIsnv.qpdDsGkYtCvAtNsaGeaeasaeLtV< + + +d+ + + L+I+ ++p+D+ +Y CvA+N +Ge ++s +LtV hh01495 44 RFEVIEFDD-GSGSVLRIQPLrTPRDEAIYECVASNNVGEISVSTRLTV 91 -* hh01495 - - PF07686.7.ls: domain 1 of 2, from 4 to 92: score 11.0, E = 0.0038 *->qsqvtqepprWGLLLASLfWptsvtvaeGgsvtLpCtysGtfddsss +v q t++ Gg +++ C+ + +d+ hh01495 4 RTPVDQ------------------TGVSGGVASFICQAT---GDP-- 27 ssgtfsiyWyrqqppgkgpeliiisyysyystsegngtvgerfkgrvtls ++ i W + ++ + r+++ hh01495 28 --RP-KIVWNK-KGK--------------KVSN-----------QRFEVI 48 gnpskgdfsLtIsnlq.lsDsGtYyCavsnsnelvfgggtrLtVl<-* +++ L+I+ l+++ D+++Y C+ sn ++ trLtVl hh01495 49 EFDDGSGSVLRIQPLRtPRDEAIYECVASNN-VGEISVSTRLTVL 92 PF00047.15.fs: domain 1 of 3, from 14 to 76: score 33.6, E = 1.8e-08 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ +++ C++ +g+p +++ W + gk++ + + ++g+++ hh01495 14 GGVASFICQA--TGDPRPKIVWNKKGKkVSnQRFEVIEFDDGSGSV- 57 tsLtitnvtpe.DggtYtCvv<-* L+i++++ +D+++Y Cv+ hh01495 58 --LRIQPLRTPrDEAIYECVA 76 PF00047.15.ls: domain 1 of 3, from 14 to 76: score 35.5, E = 1.7e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+ +++ C++ +g+p +++ W + gk++ + + ++g+++ hh01495 14 GGVASFICQA--TGDPRPKIVWNKKGKkVSnQRFEVIEFDDGSGSV- 57 tsLtitnvtpe.DggtYtCvv<-* L+i++++ +D+++Y Cv+ hh01495 58 --LRIQPLRTPrDEAIYECVA 76 PF07679.6.ls: domain 2 of 3, from 102 to 198: score 39.1, E = 1.4e-08 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+++ p+ +V +a++ C ++G+P+P+++WfKd p+ + + hh01495 102 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDT-SNN 147 sdrfkvtydgGsgt...ytLtIsnvqpdDsGkYtCvAtNs.aGeaeasae +r+k +g gt+ + L I + + +D GkY CvAtNs + + +a a+ hh01495 148 NGRIKQLRSG--GTpirGALQIEQSEESDQGKYECVATNSaGTRYSAPAN 195 LtV<-* L V hh01495 196 LYV 198 PF00047.15.ls: domain 2 of 3, from 116 to 182: score 27.7, E = 3.9e-05 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++t+ C + +g+pd+++tW+++ ++ +++ + + ++ + hh01495 116 TRTATMLCAA--SGNPDPEITWFKDFLpVDtSNNNGRIKQLRSGGTP 160 t..sLtitnvtpeDggtYtCvv<-* +++ L+i + +++D g Y Cv+ hh01495 161 IrgALQIEQSEESDQGKYECVA 182 PF00047.15.fs: domain 2 of 3, from 116 to 182: score 25.7, E = 2.6e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq ++t+ C + +g+pd+++tW+++ ++ +++ + + ++ + hh01495 116 TRTATMLCAA--SGNPDPEITWFKDFLpVDtSNNNGRIKQLRSGGTP 160 t..sLtitnvtpeDggtYtCvv<-* +++ L+i + +++D g Y Cv+ hh01495 161 IrgALQIEQSEESDQGKYECVA 182 PF07679.6.fs: domain 2 of 3, from 118 to 188: score 38.9, E = 9.4e-11 *->sarfeCkVtGtPePtVsWfKdGqplssvllpsdrfkvtydgGsgt.. +a++ C ++G+P+P+++WfKd p+ + + +r+k +g gt+ hh01495 118 TATMLCAASGNPDPEITWFKDFLPVDT-SNNNGRIKQLRSG--GTpi 161 .ytLtIsnvqpdDsGkYtCvAtNsaGe<-* + L I + + +D GkY CvAtNsaG+ hh01495 162 rGALQIEQSEESDQGKYECVATNSAGT 188 PF07679.6.ls: domain 3 of 3, from 209 to 292: score 29.4, E = 3.8e-06 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+++p + e++ G s++ +C + G+P P V W + ++l++ hh01495 209 PRFSIPPTNHEIMPGGSVNITCVAVGSPMPYVKWMLGAEDLTP---- 251 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +d + + + L+ ++v s YtCvA G ea a+ tV hh01495 252 EDDMPIGRNV------LELNDVRQ--SANYTCVAMSTLGVIEAIAQITV 292 -* hh01495 - - PF07679.6.fs: domain 3 of 3, from 209 to 292: score 27.5, E = 2e-07 *->PkFtqkpkdveVqeGesarfeCkVtGtPePtVsWfKdGqplssvllp P+F+++p + e++ G s++ +C + G+P P V W + ++l++ hh01495 209 PRFSIPPTNHEIMPGGSVNITCVAVGSPMPYVKWMLGAEDLTP---- 251 sdrfkvtydgGsgtytLtIsnvqpdDsGkYtCvAtNsaGeaeasaeLtV< +d + + + L+ ++v s YtCvA G ea a+ tV hh01495 252 EDDMPIGRNV------LELNDVRQ--SANYTCVAMSTLGVIEAIAQITV 292 -* hh01495 - - PF00047.15.fs: domain 3 of 3, from 223 to 277: score 29.7, E = 2.1e-07 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+sv++tC + g+p+++v W + +lt++++ + +n hh01495 223 GGSVNITCVA--VGSPMPYVKWMLGAEdLTpEDDMPIGRNV------ 261 tsLtitnvtpeDggtYtCvv<-* L +++v+ +++YtCv+ hh01495 262 --LELNDVR--QSANYTCVA 277 PF00047.15.ls: domain 3 of 3, from 223 to 277: score 31.5, E = 2.8e-06 *->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq G+sv++tC + g+p+++v W + +lt++++ + +n hh01495 223 GGSVNITCVA--VGSPMPYVKWMLGAEdLTpEDDMPIGRNV------ 261 tsLtitnvtpeDggtYtCvv<-* L +++v+ +++YtCv+ hh01495 262 --LELNDVR--QSANYTCVA 277 PF00041.11.fs: domain 1 of 4, from 296 to 378: score 77.2, E = 1.6e-21 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk P +P+ + vt+ t+ts+tl+W+ p+++Y ++ +pkn++ + hh01495 296 PKPPGTPVVTESTATSITLTWDSGN-PEPVSYYIIQH-KPKNSE-EL 339 eltvpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* + ++g++t++y + gL P+++Y++rV+Avn++G+Gp+S hh01495 340 YKEIDGVATtRYSVAGLSPYSDYEFRVVAVNNIGrGPPS 378 PF00041.11.ls: domain 1 of 3, from 296 to 378: score 79.2, E = 1.2e-20 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk P +P+ + vt+ t+ts+tl+W+ p+++Y ++ +pkn++ + hh01495 296 PKPPGTPVVTESTATSITLTWDSGN-PEPVSYYIIQH-KPKNSE-EL 339 eltvpgttt.sytltgLkPgteYtvrVqAvnggG.GpeS<-* + ++g++t++y + gL P+++Y++rV+Avn++G+Gp+S hh01495 340 YKEIDGVATtRYSVAGLSPYSDYEFRVVAVNNIGrGPPS 378 PF00041.11.fs: domain 2 of 4, from 390 to 477: score 69.7, E = 2.2e-19 *->P.saPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge P+saP++++++ ++st++ ++W+ P+++ng i+gY+v y ++ +++ hh01495 390 PsSAPRDVQARMLSSTTILVQWKEPEePNGQIQGYRVYY-TMDPTQH 435 ...wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++w +v ++ t+ +L+P +Y+v+V A + +G+Gp S hh01495 436 vnnWMKHNVADSQ-ITTIGNLVPQKTYSVKVLAFTSIGdGPLS 477 PF00041.11.ls: domain 2 of 3, from 390 to 477: score 71.7, E = 2.1e-18 *->P.saPtnltvtdvtstsltlsWspPt.gngpitgYevtyRqpkngge P+saP++++++ ++st++ ++W+ P+++ng i+gY+v y ++ +++ hh01495 390 PsSAPRDVQARMLSSTTILVQWKEPEePNGQIQGYRVYY-TMDPTQH 435 ...wkeltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++w +v ++ t+ +L+P +Y+v+V A + +G+Gp S hh01495 436 vnnWMKHNVADSQ-ITTIGNLVPQKTYSVKVLAFTSIGdGPLS 477 PF00041.11.ls: domain 3 of 3, from 489 to 570: score 83.6, E = 5.8e-22 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk P++P n+++++ ++ts+ lsW+pP+ + +i +Ye+ y ++ +ge++ hh01495 489 PGQPLNFKAEPESETSILLSWTPPR-SDTIANYELVY-KDGEHGEEQ 533 eltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++t+ + t sy l+gLkP++ Y +r++A++ +G G+ + hh01495 534 RITIEPGT-SYRLQGLKPNSLYYFRLAARSPQGlGAST 570 PF00041.11.fs: domain 3 of 4, from 489 to 570: score 81.6, E = 8.8e-23 *->PsaPtnltvtdvtstsltlsWspPtgngpitgYevtyRqpknggewk P++P n+++++ ++ts+ lsW+pP+ + +i +Ye+ y ++ +ge++ hh01495 489 PGQPLNFKAEPESETSILLSWTPPR-SDTIANYELVY-KDGEHGEEQ 533 eltvpgtttsytltgLkPgteYtvrVqAvnggG.GpeS<-* ++t+ + t sy l+gLkP++ Y +r++A++ +G G+ + hh01495 534 RITIEPGT-SYRLQGLKPNSLYYFRLAARSPQGlGAST 570 PF00102.17.fs: domain 1 of 2, from 946 to 1177: score 461.1, E = 1.3e-135 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv Nk+KNRy ++++yDh+RV L+ i+g ++sDY+NA+yidg hh01495 946 NKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDG-------- 984 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC y+k++ayIaTQg lp+T++DFWrM+weq+++++VM+t+l+E++r +K C hh01495 985 YRKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERSR--VK-C 1031 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina +qYWP+ g++t+G +Vtl ++ ++a y+vRt+ l+++g+ hh01495 1032 DQYWPS----RGTETHGLVQVTLLDTVELATYCVRTFALYKnGS------ 1071 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg +e+r+V++f++t+WPDhgvPe+ p+++l +lr+v+ ++p hh01495 1072 -----SEKREVRQFQFTAWPDHGVPEH-PTPFLAFLRRVKTCNP------ 1109 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf pd+g P+vVHCSAGvGRTG+fi+id++l+++++e++v d++ hh01495 1110 ---PDAG-------PMVVHCSAGVGRTGCFIVIDAMLERIKHEKTV-DIY 1148 diVkelRsqRpgmVQteeQYiFlydaile<-* + V +R+qR++mVQte+QYiF++da+le hh01495 1149 GHVTLMRAQRNYMVQTEDQYIFIHDALLE 1177 PF00102.17.ls: domain 1 of 2, from 946 to 1177: score 462.9, E = 3.8e-136 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv Nk+KNRy ++++yDh+RV L+ i+g ++sDY+NA+yidg hh01495 946 NKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDG-------- 984 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC y+k++ayIaTQg lp+T++DFWrM+weq+++++VM+t+l+E++r +K C hh01495 985 YRKQNAYIATQGSLPETFGDFWRMIWEQRSATVVMMTKLEERSR--VK-C 1031 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina +qYWP+ g++t+G +Vtl ++ ++a y+vRt+ l+++g+ hh01495 1032 DQYWPS----RGTETHGLVQVTLLDTVELATYCVRTFALYKnGS------ 1071 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg +e+r+V++f++t+WPDhgvPe+ p+++l +lr+v+ ++p hh01495 1072 -----SEKREVRQFQFTAWPDHGVPEH-PTPFLAFLRRVKTCNP------ 1109 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf pd+g P+vVHCSAGvGRTG+fi+id++l+++++e++v d++ hh01495 1110 ---PDAG-------PMVVHCSAGVGRTGCFIVIDAMLERIKHEKTV-DIY 1148 diVkelRsqRpgmVQteeQYiFlydaile<-* + V +R+qR++mVQte+QYiF++da+le hh01495 1149 GHVTLMRAQRNYMVQTEDQYIFIHDALLE 1177 PF00102.17.fs: domain 2 of 2, from 1235 to 1468: score 432.6, E = 5e-127 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv Nk KNR ++i py++tRV+L+pi+g e+sDYINAs+idg hh01495 1235 NKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDG-------- 1273 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC y+++kayIaTQgPl +T eDFWrM we+++t++VMLt+l E+gr eK C hh01495 1274 YRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGR--EK-C 1320 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina +qYWP ++s +y + V + e+ ++ y++R++++t+ d hh01495 1321 HQYWPA----ERSARYQYFVVDPMAEYNMPQYILREFKVTDaRD------ 1360 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg g++rtV++f++t+WP++gvP+sg +++d++ +v+k+++ hh01495 1361 -----GQSRTVRQFQFTDWPEQGVPKSG-EGFIDFIGQVHKTKE------ 1398 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf +++ +g Pi VHCSAGvGRTG+fi+++i+l++++ eg+v d+f hh01495 1399 -QFGQDG-------PISVHCSAGVGRTGVFITLSIVLERMRYEGVV-DIF 1439 diVkelRsqRpgmVQteeQYiFlydaile<-* ++Vk+lR+qRp mVQte+QY+F y+a le hh01495 1440 QTVKMLRTQRPAMVQTEDQYQFSYRAALE 1468 PF00102.17.ls: domain 2 of 2, from 1235 to 1468: score 434.4, E = 1.4e-127 *->NkeKNRykdilpyDhtRVkLkpipgdedsDYINAsyidgpivrllvv Nk KNR ++i py++tRV+L+pi+g e+sDYINAs+idg hh01495 1235 NKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDG-------- 1273 ykkpkayIaTQgPlpnTieDFWrMvweqkvtvIVMLtelvEkgrsseKtC y+++kayIaTQgPl +T eDFWrM we+++t++VMLt+l E+gr eK C hh01495 1274 YRQQKAYIATQGPLAETTEDFWRMLWEHNSTIVVMLTKLREMGR--EK-C 1320 aqYWPeeskeggsltyGditVtlvseekeadytvRtleltn.gdgskina +qYWP ++s +y + V + e+ ++ y++R++++t+ d hh01495 1321 HQYWPA----ERSARYQYFVVDPMAEYNMPQYILREFKVTDaRD------ 1360 kqekkgetrtVthfhytgWPDhgvPesgpkslldllrkvrksqpsnvelg g++rtV++f++t+WP++gvP+sg +++d++ +v+k+++ hh01495 1361 -----GQSRTVRQFQFTDWPEQGVPKSG-EGFIDFIGQVHKTKE------ 1398 erspdsgprSystaPivVHCSAGvGRTGtfiaidillqqleaegevidvf +++ +g Pi VHCSAGvGRTG+fi+++i+l++++ eg+v d+f hh01495 1399 -QFGQDG-------PISVHCSAGVGRTGVFITLSIVLERMRYEGVV-DIF 1439 diVkelRsqRpgmVQteeQYiFlydaile<-* ++Vk+lR+qRp mVQte+QY+F y+a le hh01495 1440 QTVKMLRTQRPAMVQTEDQYQFSYRAALE 1468 //