hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-06315334/chunk_1/iprscan-20080812-06315334.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh01495 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00194 924.0 2.5e-273 2 SM00404 330.1 1.5e-94 2 SM00060 192.6 3.7e-53 4 SM00408 152.7 3.9e-41 3 SM00409 142.5 4.6e-38 4 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00409 1/4 6 92 .. 1 58 [] 40.8 1.8e-07 SM00408 1/3 12 81 .. 1 56 [] 55.0 9.5e-12 SM00409 2/4 108 199 .. 1 58 [] 55.4 7.1e-12 SM00408 2/3 114 187 .. 1 56 [] 69.1 5.6e-16 SM00409 3/4 215 293 .. 1 58 [] 45.5 7.2e-09 SM00408 3/3 221 282 .. 1 56 [] 28.5 0.0009 SM00060 1/4 296 375 .. 1 69 [] 61.5 1.1e-13 SM00060 2/4 391 474 .. 1 69 [] 52.0 7.7e-11 SM00409 4/4 482 576 .. 1 58 [] 0.7 1.7e+02 SM00060 3/4 489 567 .. 1 69 [] 61.4 1.1e-13 SM00060 4/4 580 657 .. 1 69 [] 17.7 1.7 SM00194 1/2 922 1180 .. 1 308 [] 460.7 7.3e-134 SM00404 1/2 1076 1177 .. 1 92 [] 165.1 6.8e-45 SM00194 2/2 1209 1471 .. 1 308 [] 463.3 1.2e-134 SM00404 2/2 1365 1468 .. 1 92 [] 164.9 7.8e-45 Alignments of top-scoring domains: SM00409: domain 1 of 4, from 6 to 92: score 40.8, E = 1.8e-07 *->pp.vtvkeGesvtLtC.as.....titWy.................. p ++t++ G+ +++ C+a++++ + i W +++++ ++++ ++ hh01495 6 PVdQTGVSGGVASFICqATgdprpKIVWNkkgkkvsnqrfeviefdd 52 .....LtI.nv.tpeDsesgGtYtCaat..sgsasseqgttLtVl<-* ++++ L+I++++tp D+ ++Y C+a+++ g++s +t+LtVl hh01495 53 gsgsvLRIqPLrTPRDE---AIYECVASnnVGEISV--STRLTVL 92 SM00408: domain 1 of 3, from 12 to 81: score 55.0, E = 9.5e-12 *->leGqsVtLtCpasgdpvpnItWlk.gkplp............sgstL +G+ +++ C a+gdp p I W k+gk++++++ + + +++sgs L hh01495 12 VSGGVASFICQATGDPRPKIVWNKkGKKVSnqrfeviefddgSGSVL 58 tiknvs.leDsGlYtCvArNsvg<-* +i++ +++ D+ +Y+CvA+N+vg hh01495 59 RIQPLRtPRDEAIYECVASNNVG 81 SM00409: domain 2 of 4, from 108 to 199: score 55.4, E = 7.1e-12 *->pp.vtvkeGesvtLtC.as.....titWy.................. p+ +v + ++t+ C as++++++itW+++ + ++++++++ ++ hh01495 108 PQlKVVERTRTATMLCaASgnpdpEITWFkdflpvdtsnnngrikql 154 ..........LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl< ++++++ ++ L+I++ +++D+ G Y C+at+++g+ +s +++L+V+ hh01495 155 rsggtpirgaLQIeQSEESDQ---GKYECVATnsAGTRYS-APANLYVR 199 -* hh01495 - - SM00408: domain 2 of 3, from 114 to 187: score 69.1, E = 5.6e-16 *->leGqsVtLtCpasgdpvpnItWlk.gkplp................. + +++t+ C asg+p+p+ItW+k+ p+++++++++ ++ ++++++ hh01495 114 ERTRTATMLCAASGNPDPEITWFKdFLPVDtsnnngrikqlrsggtp 160 sgstLtiknvsleDsGlYtCvArNsvg<-* ++ L+i+ +++D G+Y+CvA+Ns+g hh01495 161 IRGALQIEQSEESDQGKYECVATNSAG 187 SM00409: domain 3 of 4, from 215 to 293: score 45.5, E = 7.2e-09 *->pp.vtvkeGesvtLtC.as.....titWy.................. p +++ ++G+sv++tC a +++ ++++W+ + + ++ ++ + +++ hh01495 215 PTnHEIMPGGSVNITCvAVgspmpYVKWMlgaedltpeddmpigrnv 261 LtI.nvtpeDsesgGtYtCaat..sgsasseqgttLtVl<-* L++++v+ + ++YtC+a ++ g++++ +++tV+ hh01495 262 LELnDVRQS-----ANYTCVAMstLGVIEA--IAQITVK 293 SM00408: domain 3 of 3, from 221 to 282: score 28.5, E = 0.0009 *->leGqsVtLtCpasgdpvpnItWlk.gkplp.......sgstLtiknv +G+sV +tC a g+p p ++W + + l ++++ + +++ L++ +v hh01495 221 MPGGSVNITCVAVGSPMPYVKWMLgAEDLTpeddmpiGRNVLELNDV 267 sleDsGlYtCvArNsvg<-* + +s +YtCvA + g hh01495 268 R--QSANYTCVAMSTLG 282 SM00060: domain 1 of 4, from 296 to 375: score 61.5, E = 1.1e-13 *->PgpPsnptelrvtdvtststsdltsvtlsWepP....ivgYr..... P pP+ ++vt+ t+t s+tl+W+ +++++ +Y+ + ++ hh01495 296 PKPPGT---PVVTESTAT------SITLTWDSGnpepVSYYIiqhkp 333 .................ytltgLkPgaepwteYefrVrAvngndaGeg<- +++++ ++ +++ +++y + gL+P+ + YefrV+Avn G+g hh01495 334 knseelykeidgvattrYSVAGLSPY----SDYEFRVVAVNN--IGRG 375 * hh01495 - - SM00060: domain 2 of 4, from 391 to 474: score 52.0, E = 7.7e-11 *->PgpPsnptelrvtdvtststsdltsvtlsWepP......ivgYr... ++P++ ++++ +st ++ ++W++P+++++ i gYr+ hh01495 391 SSAPRD---VQARMLSST------TILVQWKEPeepngqIQGYRvyy 428 .....................ytltgLkPgaepwteYefrVrAvngndaG + ++++ ++++ + ++ +++ t+ +L+P ++Y+++V A+++ G hh01495 429 tmdptqhvnnwmkhnvadsqiTTIGNLVPQ----KTYSVKVLAFTS--IG 472 eg<-* g hh01495 473 DG 474 SM00409: domain 4 of 4, from 482 to 576: score 0.7, E = 1.7e+02 *->pp.vtvkeGesvtLtC.as.....titWy.................. ++t+++G++++++ + ++ ++ ++W+++++++ + +++ hh01495 482 VItQTGVPGQPLNFKAePEsetsiLLSWTpprsdtianyelvykdge 528 ..............LtI.nvtpeDsesgGtYtCaat....sgsasseqgt ++ ++ + ++++ ++++++p+ Y+ + +++ g + s ++ hh01495 529 hgeeqritiepgtsYRLqGLKPN-----SLYYFRLAarspQGLGAS--TA 571 tLtVl<-* +++ + hh01495 572 EISAR 576 SM00060: domain 3 of 4, from 489 to 567: score 61.4, E = 1.1e-13 *->PgpPsnptelrvtdvtststsdltsvtlsWepP....ivgYr..... Pg P n +++++ ++t s+ lsW+pP ++ i +Y+ + ++ hh01495 489 PGQPLN---FKAEPESET------SILLSWTPPrsdtIANYElvykd 526 ................ytltgLkPgaepwteYefrVrAvngndaGeg<-* ++ +++++ + +++++y+l gLkP+ + Y fr++A++ +G g hh01495 527 gehgeeqritiepgtsYRLQGLKPN----SLYYFRLAARSP--QGLG 567 SM00060: domain 4 of 4, from 580 to 657: score 17.7, E = 1.7 *->PgpPsnptelrvtdvtststsdltsvtlsWepP.........ivgYr +n ++v++v +t sv lsWe P+++++ + + Y hh01495 580 SMFAKN---FHVKAVMKT------SVLLSWEIPenynsampfKILYD 617 ..............ytltgLkPgaepwteYefrVrAvngndaGeg<-* +++ +++++++ ++ + +LkP + Y+f ++ + n+aG hh01495 618 dgkmveevdgratqKLIVNLKPE----KSYSFVLTNRG-NSAGGL 657 SM00194: domain 1 of 2, from 922 to 1180: score 460.7, E = 7.3e-134 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi ++++E+e+++ ++ +++++nl+ N+ KNRY ++ hh01495 922 KFSQEYESIDPGQQF----------TWEHSNLEVNK--PKNRYA-NV 955 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT ++yDh+RV L+ ++g +gsDY+NAnyidgy++++ayIaTQG Lp+T hh01495 956 IAYDHSRVLLSAIEGI----PGSDYVNANYIDGYRKQNAYIATQGSLPET 1001 veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee.slty + DFWrM+weq+++++VM+t+l+E+ r+KC+qYWP+ +++t+ hh01495 1002 FGDFWRMIWEQRSATVVMMTKLEER--------SRVKCDQYWPSRgTETH 1043 GditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytn G +Vtl++++ l+ y +Rt+ + + g se+r+V+++++t+ hh01495 1044 GLVQVTLLDTVELA-TYCVRTFALYKNGS--------SEKREVRQFQFTA 1084 WPDhgvPespkslldfvrlvrksqssspnssenivssnskyagtspsgPi WPDhgvPe+p+++l+f+r+v+++++ +gP+ hh01495 1085 WPDHGVPEHPTPFLAFLRRVKTCNPPD-------------------AGPM 1115 vVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQTe vVHCSAGvGRTG+Fi+id++l++++++++vdi++ V +R qR++mVQTe hh01495 1116 VVHCSAGVGRTGCFIVIDAMLERIKHektVDIYGHVTLMRAQRNYMVQTE 1165 eQYiFlyraileylk<-* +QYiF+++a+le + hh01495 1166 DQYIFIHDALLEAVT 1180 SM00404: domain 1 of 2, from 1076 to 1177: score 165.1, E = 6.8e-45 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk.......PivV +v+++++t+WpDh gvPe++ ++l flr+v+ ++++ +P+vV hh01495 1076 EVRQFQFTAWPDH-----GVPEhpTPFLAFLRRVKTcnppdagPMVV 1117 HCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqteeQ HCSAGvGRTG+f++id +l++ +++++vdi++ v +R qR+ mvqte+Q hh01495 1118 HCSAGVGRTGCFIVIDAMLERikhektVDIYGHVTLMRAQRNYMVQTEDQ 1167 YlFlyralle<-* Y+F+++alle hh01495 1168 YIFIHDALLE 1177 SM00194: domain 2 of 2, from 1209 to 1471: score 463.3, E = 1.2e-134 *->gleeEferlqrltpddllsnfltdesctvanlpeNreseKNRYkcdi g e Ef+rl + + + + ++ +anlp+N+ KNR +i hh01495 1209 GMELEFKRLASSKAHTS--------RFISANLPCNK--FKNRLV-NI 1244 lpyDhtRVkLkppdgesdseegsDYINAnyidgykepkayIaTQGPLpsT +py++tRV+L+p+ g egsDYINA++idgy+++kayIaTQGPL +T hh01495 1245 MPYESTRVCLQPIRGV----EGSDYINASFIDGYRQQKAYIATQGPLAET 1290 veDFWrMVweqkvpvIVMLtnlvEkkterrkeggreKCaqYWPee.slty eDFWrM we++++++VMLt+l E+ greKC+qYWP e+s y hh01495 1291 TEDFWRMLWEHNSTIVVMLTKLREM--------GREKCHQYWPAErSARY 1332 GditVtlvseeklpddytiRtlevtntgtekkdlkaksetrtVthyhytn + V + e+++p y++R+++vt+ + +++rtV+++++t+ hh01495 1333 QYFVVDPMAEYNMP-QYILREFKVTDARD--------GQSRTVRQFQFTD 1373 WPDhgvPespkslldfvrlvrksqssspnssenivssnskyagtspsgPi WP++gvP+s ++++df+ +v+k+++++++ +gPi hh01495 1374 WPEQGVPKSGEGFIDFIGQVHKTKEQFGQ-----------------DGPI 1406 vVHCSAGvGRTGTFiaidillqqlea...vdifdiVkelRsqRpgmVQTe VHCSAGvGRTG+Fi+++i+l++++ ++ vdif++Vk+lR+qRp mVQTe hh01495 1407 SVHCSAGVGRTGVFITLSIVLERMRYegvVDIFQTVKMLRTQRPAMVQTE 1456 eQYiFlyraileylk<-* +QY+F yra+leyl hh01495 1457 DQYQFSYRAALEYLG 1471 SM00404: domain 2 of 2, from 1365 to 1468: score 164.9, E = 7.8e-45 *->tvkhyhytgWpDhvekdsgvPe..dsileflravrk.........Pi tv+++++t+Wp++ gvP++++++++f+ +v+k++++ ++++Pi hh01495 1365 TVRQFQFTDWPEQ-----GVPKsgEGFIDFIGQVHKtkeqfgqdgPI 1406 vVHCSAGvGRTGtfvaidillqq......vdifdtvkelRsqRpgmvqte VHCSAGvGRTG+f++++i+l++ + ++ vdif+tvk+lR+qRp mvqte hh01495 1407 SVHCSAGVGRTGVFITLSIVLERmryegvVDIFQTVKMLRTQRPAMVQTE 1456 eQYlFlyralle<-* +QY+F yra le hh01495 1457 DQYQFSYRAALE 1468 //