hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080812/iprscan-20080812-06444577/chunk_1/iprscan-20080812-06444577.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: hh01833 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00282 515.3 2.6e-150 5 SM00180 150.8 1.4e-40 3 SM00181 37.4 1.9e-06 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00180 1/3 111 158 .. 1 42 [] 42.3 6.6e-08 SM00181 1/3 119 159 .. 1 32 [] 13.3 17 SM00180 2/3 161 213 .. 1 42 [] 47.1 2.3e-09 SM00181 2/3 174 214 .. 1 32 [] 4.6 1e+02 SM00180 3/3 216 267 .. 1 42 [] 61.4 1.1e-13 SM00181 3/3 230 268 .. 1 32 [] 19.6 0.44 SM00282 1/5 886 1043 .. 1 137 [] 64.3 1.5e-14 SM00282 2/5 1100 1239 .. 1 137 [] 103.0 3.4e-26 SM00282 3/5 1284 1408 .. 1 137 [] 76.6 3e-18 SM00282 4/5 1520 1655 .. 1 137 [] 145.5 5.6e-39 SM00282 5/5 1697 1830 .. 1 137 [] 125.9 4.4e-33 Alignments of top-scoring domains: SM00180: domain 1 of 3, from 111 to 158: score 42.3, E = 6.6e-08 *->CdCnlpppvG....Cdp.tGqClnCkpnttGGrrCdderCapGyy.. CdCn G++++C ++G C+ C+ nttG ++C+ +C++Gy ++ hh01833 111 CDCN-----GnsneCLDgSGYCVHCQRNTTG-EHCE--KCLDGYIgd 149 .......gC<-* + ++ ++ C hh01833 150 sirgapqFC 158 SM00181: domain 1 of 3, from 119 to 159: score 13.3, E = 17 *->eCa....pCsnGgtEqnGtCi....sytC..CpgpGytg........ eC+++++ C +C++++++ +C++C +Gy+g++ ++ ++ hh01833 119 ECLdgsgYCV--------HCQrnttGEHCekCL-DGYIGdsirgapq 156 rCe<-* C+ hh01833 157 FCQ 159 SM00180: domain 2 of 3, from 161 to 213: score 47.1, E = 2.3e-09 *->CdCnlpppvG.......Cdp...tGqClnCkpnttGGrrCdderCap C+C+ + + ++C+++++ +C+ C +n++G ++C+ rCap hh01833 161 CPCP---LPHlanfaesCYRkngAVRCI-CNENYAG-PNCE--RCAP 200 Gyy........gC<-* Gyy+++ +++C hh01833 201 GYYgnplligsTC 213 SM00181: domain 2 of 3, from 174 to 214: score 4.6, E = 1e+02 *->eCa......pCsnGgtEqnGtCi....sytC..CpgpGytg...... C ++++ C C ++ ++ C++C+ pGy+g++ + hh01833 174 SCYrkngavRCI---------CNenyaGPNCerCA-PGYYGnpllig 210 .rCe<-* ++C+ hh01833 211 sTCK 214 SM00180: domain 3 of 3, from 216 to 267: score 61.4, E = 1.1e-13 *->CdCnlpppvG..........Cdp.tGqClnCkpnttGGrrCdderCa CdC+ G+++++ ++Cd tGqC+nC nttG +C+ rCa hh01833 216 CDCS-----GnsdpnlifedCDEvTGQCRNCLRNTTG-FKCE--RCA 254 pGyy.......gC<-* pGyy++ + ++C hh01833 255 PGYYgdariakNC 267 SM00181: domain 3 of 3, from 230 to 268: score 19.6, E = 0.44 *->eCa....pCsnGgtEqnGtCi....sytC..CpgpGytg......rC +C++ ++ C n C++++++++C++C+ pGy+g+ + ++C hh01833 230 DCDevtgQCRN--------CLrnttGFKCerCA-PGYYGdariakNC 267 e<-* hh01833 268 A 268 SM00282: domain 1 of 5, from 886 to 1043: score 64.3, E = 1.5e-14 *->t.lsisfsFrTtspn........GlLlyag....ggdflaleLvlED +s+s+++++ ++++ +++ + ++ly+g+++ +++++ l+++ hh01833 886 AfTSLSLYMKPPVKRpeltetadQFILYLGsknaKKEYMGLAIK--- 929 sdgdGrlvlrydlGssttggparltsdsdrptplnDGqWHrVsvern..g + +lv++y+lG +++ ds+ p++ + V++er ++ hh01833 930 ---NDNLVYVYNLGT----KDVEIPLDSK-PVSSWPAYFSIVKIERVgkH 971 rsvtLsVDggnpvsges............t.LdldkeesgplylGGlPe. ++v L+V +++ ++e + ++++ +++++ Ldld+ e++ +y+GG+P++ hh01833 972 GKVFLTVP-SLSSTAEEkfikkgefsgddSlLDLDP-EDTVFYVGGVPSn 1019 .....lpvspgFrGCirnlrvngk<-* + +++++ pgF+GC++ ++n+ hh01833 1020 fklptSLNLPGFVGCLELATLNND 1043 SM00282: domain 2 of 5, from 1100 to 1239: score 103.0, E = 3.4e-26 *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry + +++ +++rT ++nGl+l + +g+ f+ le++ +G+l++ y hh01833 1100 QvTRFDIEVRTPADNGLILLMVnGSMFFRLEMR------NGYLHVFY 1140 dlGssttggparltsdsdrptplnDGqWHrVsvern.grsvtLsVDggnp d+G s ggp++l+ + + + ++nD ++H +s+++ +++++ L+VD ++ hh01833 1141 DFGFS--GGPVHLEDTLK-KAQINDAKYHEISIIYHnDKKMILVVD-RRH 1186 vsges.t.LdldkeesgplylGGlPe...........lpvspgFrGCirn v + +++++ ++ +++y+GG+P++ +++ + +lp +FrGC+++ hh01833 1187 VKSMDnEkMKIPF---TDIYIGGAPPeilqsralrahLPLDINFRGCMKG 1233 lrvngk<-* ++++ k hh01833 1234 FQFQKK 1239 SM00282: domain 3 of 5, from 1284 to 1408: score 76.6, E = 3e-18 *->t.lsisfsFrTtspnGlLlyag.ggdflaleLvlEDsdgdGrlvlry ++++ f FrT +pnGlL+y ++g+d ++++L +G++++ + hh01833 1284 DgFEGGFNFRTLQPNGLLFYYAsGSDVFSISLD------NGTVIMDV 1324 dlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg.... + ++d +++nDG H V + + ++ +L+VD+++ + hh01833 1325 KGIK-------VQSVD----KQYNDGLSHFVISSVSPTRYELIVDKsrvg 1363 .gnpvsges.t.LdldkeesgplylGGlPelpvspgFrGCirnlrvngk< ++np+ g+++++ ++ ++y+GG P ++ ++F+GCi+n ++ ++ hh01833 1364 sKNPTKGKIeQtQASE----KKFYFGGSPISAQYANFTGCISNAYFTRV 1408 -* hh01833 - - SM00282: domain 4 of 5, from 1520 to 1655: score 145.5, E = 5.6e-39 *->t.lsisfsFrTtspnGlLlyag...ggdflaleLvlEDsdgdGrlvl ++++s+++rT+s++G+++y+++++ +df++l+L +Grlv+ hh01833 1520 AkSQFSIRLRTRSSHGMIFYVSdqeENDFMTLFLA------HGRLVY 1560 rydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDggn +++ G+ + +++s+ +++nDG WH+V ++r+++s++L++D g+ hh01833 1561 MFNVGH----KKLKIRSQ----EKYNDGLWHDVIFIRERSSGRLVID-GL 1601 pvsges.....t.LdldkeesgplylGGlPe........lpvspgFrGCi +v++es ++++ +++ + gp+ylGG+ +++ ++ ++++ +F+GC+ hh01833 1602 RVLEESlppteAtWKIK----GPIYLGGVAPgkavknvqINSIYSFSGCL 1647 rnlrvngk<-* +nl++ng hh01833 1648 SNLQLNGA 1655 SM00282: domain 5 of 5, from 1697 to 1830: score 125.9, E = 4.4e-33 *->t.lsisfsFrTtspnGlLlyag..ggdflaleLvlEDsdgdGrlvlr +++i f++r++s++G L++ ++ g++l ++++ +G++++ hh01833 1697 LkFEIAFEVRPRSSSGTLVHGHsvNGEYLNVHMK------NGQVIVK 1737 ydlGssttggparltsdsdrptplnDGqWHrVsverngrsvtLsVDg.gn +++G + +++++++ +++l+DG+WHr++v+r+ + v+L VD++ n hh01833 1738 VNNGI----RDFSTSVTP--KQSLCDGRWHRITVIRDSNVVQLDVDSeVN 1781 pvsges..t.LdldkeesgplylGGlPe......lpvspgFrGCirnlrv +v+g +++++d +p+++GG+Pe+ +++l+ s++F+GCir +++ hh01833 1782 HVVGPLnpKpIDHR----EPVFVGGVPEslltprLAPSKPFTGCIRHFVI 1827 ngk<-* +g hh01833 1828 DGH 1830 //