hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080812/iprscan-20080812-07214998/chunk_1/iprscan-20080812-07214998.nocrc
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Query sequence: hh02276
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01302.15.ls CAP-Gly domain                                 130.3      5e-36   1
PF01302.15.fs CAP-Gly domain                                 128.4    1.8e-35   1
PF00023.20.ls Ankyrin repeat                                  55.5    1.6e-13   3
PF00023.20.fs Ankyrin repeat                                  49.9    6.4e-13   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00023.20.fs   1/3     107   148 ..     1    33 []    14.3   0.0054
PF00023.20.ls   1/3     107   148 ..     1    33 []    16.3      0.1
PF00023.20.ls   2/3     150   184 ..     1    33 []    10.2     0.97
PF00023.20.fs   2/3     150   184 ..     1    33 []     8.2     0.26
PF00023.20.ls   3/3     187   219 ..     1    33 []    29.0  1.6e-05
PF00023.20.fs   3/3     190   219 ..     4    33 .]    27.3  1.2e-06
PF01302.15.ls   1/1     286   351 ..     1    74 []   130.3    5e-36
PF01302.15.fs   1/1     286   351 ..     1    74 []   128.4  1.8e-35

Alignments of top-scoring domains:
PF00023.20.fs: domain 1 of 3, from 107 to 148: score 14.3, E = 0.0054
                   *->dGfTPLHlAalrg.........nlevvklLlsqGAdlnaqdd<-*
                        +T LH+ +++g ++ ++ +  ++ ++ L++ GAd+ ++ +   
     hh02276   107    TDMTLLHYTCKSGahgigdvetAVKFATQLIDLGADISLRSR    148  

PF00023.20.ls: domain 1 of 3, from 107 to 148: score 16.3, E = 0.1
                   *->dGfTPLHlAalrg.........nlevvklLlsqGAdlnaqdd<-*
                        +T LH+ +++g ++ ++ +  ++ ++ L++ GAd+ ++ +   
     hh02276   107    TDMTLLHYTCKSGahgigdvetAVKFATQLIDLGADISLRSR    148  

PF00023.20.ls: domain 2 of 3, from 150 to 184: score 10.2, E = 0.97
                   *->dGfTPLHlAalrgnlevvklLls..qGAdlnaqdd<-*
                        + +LH+Aa+ + +e+++  l++++  d++a+     
     hh02276   150    TNMNALHYAAYFDVPELIRVILKtsKPKDVDATCS    184  

PF00023.20.fs: domain 2 of 3, from 150 to 184: score 8.2, E = 0.26
                   *->dGfTPLHlAalrgnlevvklLls..qGAdlnaqdd<-*
                        + +LH+Aa+ + +e+++  l++++  d++a+     
     hh02276   150    TNMNALHYAAYFDVPELIRVILKtsKPKDVDATCS    184  

PF00023.20.ls: domain 3 of 3, from 187 to 219: score 29.0, E = 1.6e-05
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +  T+LH+Aa++ ++  vk+Ll+qGA++  ++d   
     hh02276   187    NFGTALHIAAYNLCAGAVKCLLEQGANPAFRND    219  

PF00023.20.fs: domain 3 of 3, from 190 to 219: score 27.3, E = 1.2e-06
                   *->TPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      T+LH+Aa++ ++  vk+Ll+qGA++  ++d   
     hh02276   190    TALHIAAYNLCAGAVKCLLEQGANPAFRND    219  

PF01302.15.ls: domain 1 of 1, from 286 to 351: score 130.3, E = 5e-36
                   *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN
                      +G+RV + g+    ++Gt+R++G+t+fa+G+  W+G+ELDeP+ GKN
     hh02276   286    LGDRVVIAGQ----KVGTLRFCGTTEFASGQ--WAGIELDEPE-GKN 325  

                   DGsvkGvrYFqCegpkyGiFvrpskve<-*
                   +Gsv+ v+YF C  pkyGiF+++sk++   
     hh02276   326 NGSVGKVQYFKCA-PKYGIFAPLSKIS    351  

PF01302.15.fs: domain 1 of 1, from 286 to 351: score 128.4, E = 1.8e-35
                   *->iGsRVevggggeedrrGtVRYvGetdfapGtniWvGVELDePlrGKN
                      +G+RV + g+    ++Gt+R++G+t+fa+G+  W+G+ELDeP+ GKN
     hh02276   286    LGDRVVIAGQ----KVGTLRFCGTTEFASGQ--WAGIELDEPE-GKN 325  

                   DGsvkGvrYFqCegpkyGiFvrpskve<-*
                   +Gsv+ v+YF C  pkyGiF+++sk++   
     hh02276   326 NGSVGKVQYFKCA-PKYGIFAPLSKIS    351  

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